SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene65075

Length: 417 nt

Origin of reads: Uagpf v2

UniGene Fasta

>sp_v2.0_unigene65075
CGTCGTGACCTTGGCTGTCACTCAGTTACTGTAACTTTTGTGATCCAGATATTCCAAGGTTTTACTATGGGTCTCATTACTCAAGTATGGGAAGTGTACTTTTTTATCTACTGAGACTGGAGCCCTTTACAACTTTTCATCGTAATTTGCAGGGGGGTAGATTTGATCATGCAGATCGACTTTTTCAGAGCATAGAAGGTACCTATGCAAACTGTTTGTCCAATACCAGTGATGTGAAGGAGTTGATACCAGAGTTTTTCTACATGCCAGAGTTTCTGGTCAATTCTAATCAATATCACCTTGGCATAAAGCAAGATGGTGAACCTCTTGGTGATGTTGTCCTGCCACGATGGGCAAAGGATTCACCTGAGGAATTCATATTCAAAAACCGGGAAGCACTTGAGAGTGAGTATGTTA

Ace file of the UniGene sp_v2.0_unigene65075

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	pfam02138, Beach, Beige/BEACH domain	-	-	63%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	86%
Blast2go	wd40 and beach domain-containing protein	-	-	87%

Source	GOs	Term	Type	e value	Identity
Blast2go	mitochondrion	GO:0005739	Cellular Component	0.0	87%

Source	InterPros	Term	Type	Identity
Sma3	Phox/Bem1p	IPR000270	-	-
Sma3	Zinc finger, FYVE-type	IPR000306	-	-
Sma3	BEACH domain	IPR000409	-	-
Sma3	WD40 repeat	IPR001680	-	-
Sma3	DNA mismatch repair protein	IPR002099	-	-
Sma3	ATPase-like, ATP-binding domain	IPR003594	-	-
Sma3	DNA mismatch repair protein Mlh1	IPR011186	-	-
Sma3	Armadillo-like helical	IPR011989	-	-
Sma3	DNA mismatch repair protein, C-terminal	IPR013507	-	-
Sma3	DNA mismatch repair, conserved site	IPR014762	-	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	Zinc finger, FYVE-related	IPR017455	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-
Sma3	Glycoside hydrolase, family 1, active site	IPR018120	-	-
Sma3	Ribosomal protein S14, conserved site	IPR018271	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-
Sma3		IPR019782	-	-
Sma3	Peroxidases heam-ligand binding site	IPR019793	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: F6H145

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 457 aas, your sequence is shorter than subject: 138 - 3193

Fln protein: S*PWLSLSYCNFCDPDIPRFYYGSHYSSMGSVLFYLLRLEPFTTFHRNLQGGRFDHADRLFQSIEGTYANCLSNTSDVKELIPEFFYMPEFLVNSNQYHLGIKQDGEPLGDVVLPRWAKDSPEEFIFKNREALESEYV

Protein Length: 139

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGTTACTGTAACTTTTGTGATCCAGATATTCCAAGGTTTTACTATGGGTCTCATTACTCAAGTATGGGAAGTGTACTTTTTTATCTACTGAGACTGGAGCCCTTTACAACTTTTCATCGTAATTTGCAGGGGGGTAGATTTGATCATGCAGATCGACTTTTTCAGAGCATAGAAGGTACCTATGCAAACTGTTTGTCCAATACCAGTGATGTGAAGGAGTTGATACCAGAGTTTTTCTACATGCCAGAGTTTCTGGTCAATTCTAATCAATATCACCTTGGCATAAAGCAAGATGGTGAACCTCTTGGTGATGTTGTCCTGCCACGATGGGCAAAGGATTCACCTGAGGAATTCATATTCAAAAACaGGGAAGCACTTGAGAGTGAGTATGTTA

Fln Alignment:

AllPineV4_c85937___YCNFCDPDIPRFYYGSHYSSMGSVLFYLLRLEPFTTFHRNLQGGRFDHADRLFQSIEGTYANCLSNTSDVKELIPEFFYMPEFLVNSNQYHLGIKQDGEPLGDVVLPRWAKDSPEEFIFKNREALESEYV
F6H145_______________YRNFCDPDIPSFYYGSHYSSMGIVLFYLLRLEPFTALHRNLQGGKFDHADRLFQSIEATYRNCLSNTSDVKELIPEFFYMPEFLVNSNSYHLGVKQDGGPIGDICLPPWAKGSPEEFINRNREALESEYV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain