SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene65074

Length: 1211 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene65074

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	pfam01762, Galactosyl_T, Galactosyltransferase	-	-	1.0e-29	27%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	96%
Blast2go	avr9 elicitor response protein	-	-	0.0	84%

Source	GOs	Term	Type	e value	Identity
Blast2go	cell part	GO:0044464	Cellular Component	0.0	84%

Source	InterPros	Term	Type	Identity
Sma3	GPCR, rhodopsin-like, 7TM	IPR000276	-	-
Sma3	RNA recognition motif domain	IPR000504	-	-
Sma3	Glycosyl transferase, family 31	IPR002659	-	-
Sma3	2Fe-2S ferredoxin, iron-sulphur binding site	IPR006058	-	-
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	-

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5AE09

Fln msg: Distance to subject end: 137 aas, W1: There is no M at the beginning, your sequence is shorter than subject: 201 - 335

Fln protein: RQAKSRKWRKQRYNGEVAKTHQAIQSLDKTISSLEMELAVARTAKSANLNGSPVLEKPDGQGPEVRQKAFVVIGINTAFSSRKRRDSVRETWMPQGSKLKQLEEKKGIVIRFVIGHSVTPGGILDRAIDSEDAQHHDFLRLEHVEGYHELSAKTKTYFSTAVAKWDADFYVKVDDDVHVNLGMLATTLARYRSKPRIYIGH

Protein Length: 202

Fln nts: GAGGGTTTTTCTCCGGTTTGGAATTTGACTAAAATAAAAGTGCGCCTAATTTGCCGTAAGAATGTATATAACTAATTCTTATTTTCAAATTTAGTCGGAGTATGGTTCGATGATTATTTTTGCGGCTATTAGCGCTGTAATCGGAGTTATTTTACACAATTTGTAATTTTTGGACTACTGTGCTAAAAGTCTGACTTTGGCGGCAATTGTATGAAGACTGCCTTTTGACAGCAGAATGAGTTGAAATGCAAATACTTTCATCGATTGCACTGAAAACTGGATGATgAACATTTGGAACCGGTGATTTTCAATTTTGACAGGTTTTGGGAGAGAGACAGGGGCAAACCGACAAGAAAACGGGCTTAGGCTTAGGCTTAGGCTCGTTGGCAGGGGAAAGTTTGGAGTGGCCTTCTGAAGAAAACGAAAAAAAAATGCGGGGCAGATCTTCCGGGGGTTCGTTTTCCCCCAAATTGATTGTGCTCCTCTGCGTTGCGAGTTTCTGCATCGGTATGCTCTTTACTAACAGAATGTGGAGCAATCCTGAGACGTACGATGACGTTGATCCCACGCACAAACGGGAATTGCAAGTTCTTTCTCAAGATTGTGAAGACAAGCAAAAAGTCGAAAATGGCGAAAGCAGAGATATAATGGGGAAGTTGCCAAGACACATCAGGCCATTCAATCGTTGGACAAAACAATTTCTTCTCTTGAAATGGAATTAGCAGTTGCTCGGACTGCAAAATCAGCCAACCTCAATGGGTCACCTGTTCTTGAGAAGCCTGATGGACAAGGCCCTGAGGTACGCCAGAAGGCATTTGTTGTGATTGGAATCAATACAGCTTTTAGCAGTAGAAAGCGGCGGGACTCTGTTCGAGAAACCTGGATGCCACAAGGATCCAAACTGAAGCAGTTGGAGGAGAAGAAAGGCATTGTTATTAGATTTGTTATTGGACACAGTGTTACACCTGGTGGTATTTTGGATCGTGCCATTGATTCAGAAGATGCACAGCATCATGATTTCCTTAGATTGGAACATGTTGAAGGCTACCACGAGCTCTCAGCAAAGACCAAGACCTATTTTTCTACAGCAGTAGCAAAATGGGATGCAGATTTCTATGTTAAGGTCGATGATGATGTGCATGTTAATTTAGGGATGCTGGCCACCACTCTTGCACGATACCGATCTAAACCAAGAATTTACATTGGTCATT

Fln Alignment:

AllPineV4_rep_c85934___SLDKTISSLEMELAVARTAKSANLNGSPVLEKPDGQGPEVRQKAFVVIGINTAFSSRKRRDSVRETWMPQGSKLKQLEEKKGIVIRFVIGHSVTPGGILDRAIDSEDAQHHDFLRLEHVEGYHELSAKTKTYFSTAVAKWDADFYVKVDDDVHVNLGMLATTLARYRSKPRIYIG
D5AE09_______________SLDKTISSLEMELAVARTAKSANLNGSPVLEKPDGRGSEVRQKAFVVIGINTAFSSRKRRDSVRETWMPQGPKLKQLEEKKGIVIRFVIGHSVTPGGILDRAIDAEDAQHNDFLRLEHVEGYHELSAKTKTYFSTAVAKWDADFYVKVDDDVHVNLGMLATTLSRYRSKPRIYIG

SSRs (tot: 1)

Start position	End position	Sequence	Length
360	381	GGCTTA GGCTTA GGCTTA GGCT	22

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain