SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene65065

Length: 515 nt

Origin of reads: Biogeco1 v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene65065
AATGTATTTAACGGATTGCTCGGCATATTCCAGCATATACGCGGCTGCAATTCTAAATAAAGCTGGTCCGACTGATACTACTACGGCCTGGTGTTTGTTTTTCATCGGCCTGAATTCGGCTCACAAGAAGAACTATGCCTGGGTTTACGGGGCTGTGGCTGCGGGGGTTTCGGTGTGCGTCTTGGGATGTGTGGTGGGGTTTCTGTATTGGAGGAGGAGAAGGGCGAGGATGGAGAAGAAGAAGGTTTTGGCCGAATTTGAGGCCTCTGATCCATGCCCCTTGAATCCTAACAGTACGTTGGTTCGGTTCACGATCGAGGATATCAGGGCGGCCACAAAGAATTTTTCGAGGGAGAATATCGTCGGCACCGGTGGTTTTGGGAATGTTTACAAGGGGGTTTTGGCAGATGGATCACTTGTTGCAGTGAAGAGATTCAAGAATTGTTCTCCGGCTGGAGATCCGGAATTTGTGCACGAGATCGACGTGATTTCCAGTATAAGGCATCGTAATTTAG

Ace file of the UniGene sp_v2.0_unigene65065 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Receptor-like kinase n=1 Tax=Marchantia polymorpha RepID=A7VM41_MARPO	-	-	1.0e-28	42%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	91%
Blast2go	probable lrr receptor-like serine threonine-protein kinase rkf3-like	-	-	0.0	63%

Source	GOs	Term	Type	Identity
Blast2go	protein binding	GO:0005515	Molecular Function	63%
Blast2go	transferase activity	GO:0016740	Molecular Function	63%
Blast2go	plasma membrane	GO:0005886	Cellular Component	63%

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Transcription factor, MADS-box	IPR002100	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LPC1

Fln msg: Distance to subject end: 272 aas, your sequence is shorter than subject: 171 - 611

Fln protein: MYLTDCSAYSSIYAAAILNKAGPTDTTTAWCLFFIGLNSAHKKNYAWVYGAVAAGVSVCVLGCVVGFLYWRRRRARMEKKKVLAEFEASDPCPLNPNSTLVRFTIEDIRAATKNFSRENIVGTGGFGNVYKGVLADGSLVAVKRFKNCSPAGDPEFVHEIDVISSIRHRNL

Protein Length: 172

Fln nts: AATGTATTTAACGGATTGCTCGGCATATTCCAGCATATACGCGGCTGCAATTCTAAATAAAGCTGGTCCGACTGATACTACTACGGCCTGGTGTTTGTTTTTCATCGGCCTGAATTCGGCTCACAAGAAGAACTATGCCTGGGTTTACGGGGCTGTGGCTGCGGGGGTTTCGGTGTGCGTCTTGGGATGTGTGGTGGGGTTTCTGTATTGGAGGAGGAGAAGGGCGAGGATGGAGAAGAAGAAGGTTTTGGCCGAATTTGAGGCCTCTGATCCATGCCCCTTGAATCCTAACAGTACGTTGGTTCGGTTCACGATCGAGGATATCAGGGCGGCCACAAAGAATTTTTCGAGGGAGAATATCGTCGGCACCGGTGGTTTTGGGAATGTTTACAAGGGGGTTTTGGCAGATGGATCACTTGTTGCAGTGAAGAGATTCAAGAATTGTTCTCCGGCTGGAGATCCGGAATTTGTGCACGAGATCGACGTGATTTCCAGTATAAGGCATCGTAATTTAG

Fln Alignment:

AllPineV4_rep_c85909___LTDCXXXXXXXXXXILNKAGPTDTTTAWCLFFIGLNSAHKKNYXXXXXXXXXXXXXXXXXXXXGFLYWRRRRARMEKKKVLAEFEASDPCPLNPNSTLVRFTIEDIRAATKNFSRENIVGTGGFGNVYKGVLADGSLVAVKRFKNCSPAGDPEFVHEIDVISSIRHRNL
B8LPC1_______________LTDCSAYSSIYAAAILNKAGPTDKNTAWCLFFIGLNLSSGKNSAWIYGAVAAGVSVCVLGAVVGFLYCRRRRARMEKKKVLAEFEASDPCSMNPNSTLVRFTIEDIRAATKNFARENIVGTGGFGNVYKGVLADGSLVAVKRFKNCSPAGDPEFVHEVDVISSIRHRNL

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
449	66		33		0.997457

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain