SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene65058

Length: 548 nt

Origin of reads: Biogeco2 v2

UniGene Fasta

>sp_v2.0_unigene65058
CGTCGTGACCTTGGCTGTCACTCGTGACTTTTGCTGTCTGTCGATTTAGCAGATAAGTGGCTTATGGTACTCGGAACCATAGGAACCATTGCAGATGGAGTTGCCACGCCTGCGACGATGCTTATCATGAGCAGTTTGATGGACACAATAGGAAAGGGTCCATCGGGCATTAATTTCACTCATATGATCAGCACGTATACTTTGCGTCTAGTGTATTTGTCGATCGGTGTGATGGTTGCTGCGTTTCTTGAGGCGTTCTGTTGGGCGAGAACCGGTGAAAGGCAAGCATCTAGGATGCGTATAAAGTATTTGAAAGCGGTATTGAGGCAAGACGAAGGATTCTTTGACACTGAAGGAACTACCACGTCAGAAGTGGTTACCAGCGTTTCTAATGATACTCTCATTATACAGGACGTTTTCGCTGAAAAGCTACCCAGCTTCATCATGAATATGTCTCTGTTCGTCGGCAGTTATTTTGTGGCATTCTACTTGACATGGAGACTCGCAACAGTGTCATTCCCTTTCATTATCTTGCTGATGATTCCAGG

Ace file of the UniGene sp_v2.0_unigene65058

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Multidrug resistance protein 1, 2, putative n=1 Tax=Ricinus communis RepID=B9RUH9_RICCO	-	-	9.94922e-44	48%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	46%
Blast2go	abc transporter b family member	-	-	0.0	69%

Source	GOs	Term	Type	e value	Identity
Blast2go	plasma membrane	GO:0005886	Cellular Component	0.0	69%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase, cysteine peptidase active site	IPR000169	-	-
Sma3	ABC transporter, transmembrane domain	IPR001140	-	-
Sma3	ABC transporter-like	IPR003439	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-
Sma3	ABC transporter, integral membrane type 1	IPR017940	-	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NR86

Fln msg: Unexpected stop codon in the beginning of your sequence, STOP codon was not found. Distance to subject end: 15 aas, your sequence is shorter than subject: 182 - 218

Fln protein: RRDLGCHS*LLLSVDLADKWLMVLGTIGTIADGVATPATMLIMSSLMDTIGKGPSGINFTHMISTYTLRLVYLSIGVMVAAFLEAFCWARTGERQASRMRIKYLKAVLRQDEGFFDTEGTTTSEVVTSVSNDTLIIQDVFAEKLPSFIMNMSLFVGSYFVAFYLTWRLATVSFPFIILLMIP

Protein Length: 183

Fln nts: CGTCGTGACCTTGGCTGTCACTCGTGACTTTTGCTGTCTGTCGATTTAGCAGATAAGTGGCTTATGGTACTCGGAACCATAGGAACCATTGCAGATGGAGTTGCCACGCCTGCGACGATGCTTATCATGAGCAGTTTGATGGACACAATAGGAAAGGGTCCATCGGGCATTAATTTCACTCATATGATCAGCACGTATACTTTGCGTCTAGTGTATTTGTCGATCGGTGTGATGGTTGCTGCGTTTCTTGAGGCGTTCTGTTGGGCGAGAACCGGTGAAAGGCAAGCATCTAGGATGCGTATAAAGTATTTGAAAGCGGTATTGAGGCAAGACGAAGGATTCTTTGACACTGAAGGAACTACCACGTCAGAAGTGGTTACCAGCGTTTCTAATGATACTCTCATTATACAGGACGTTTTCGCTGAAAAGCTACCCAGCTTCATCATGAATATGTCTCTGTTCGTCGGCAGTTATTTTGTGGCATTCTACTTGACATGGAGACTCGCAACAGTGTCATTCCCTTTCATTATCTTGCTGATGATTCCAGG

Fln Alignment:

AllPineV4_rep_c85880___LLLSVDLADKWLMVLGTIGTIADG-VATPATMLIMSSLMDTIGKGPSGINFTHMISTYTLRLV---YLSIGVMVAAFLEAFCWARTGERQASRMRIKYLKAVLRQDEGFFDXXXXXXXXXXXXXXNDTLIIQDVFAEKLPSFIMNMSLFVGSYFVAFYLTWRLATVSFPFIILLMI
A9NR86_______________ILRYVDCVDVLMMLLGTFGSIADGSLGGAGVLIILTGLINSLGSDLPALKHGDFVNTMNKQIVPFLYLAAGVWIAAFLEGFCWTRTGERQASLLRRKYLRAVLRQDVGFFDTSRTHIAEVVNTAYNDTLVIQDALSEKVPNFVMNLSNFIACYAAGLYLSWKLALVTLPLASLLIV

SNPs (tot: 3)

Position	A %	C %	G %	T %	Probability
475	66	33			0.997457
476			33	66	0.997476
477		33		66	0.997476

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain