SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene64932

Length: 564 nt

Origin of reads: Biogeco3 v1 Uagpf v2

UniGene Fasta

>sp_v2.0_unigene64932
CGTCGTGACCTTGGCTGTCACTCAGTTTAGTGGGAATTAGAAACTCTCAGAAACCTCCTCACTCAAGAGGATATCTGGAGGCGATTATCAGCGTGGAGTAGGTTAATTCTTTGTCATAATTAAGCAGGTAAGTAGGGAATTAAGGAAGGAAATCTGAGGAGTAGATTCTCTTGAAGGATTTCGTGTCTTGTCTTGTTGGGAAGAAATTGAGAGTCTATACACACAATGAGGCTGTCCTCCTCGGGCTTCTCTCAGCAGCCTCAAGAAGGGGAAAGGAGAAGTCTTAATTCAGAGCTGTGGCATGCCTGTGCCGGGCCCCTTGTATCTCTACCTGCAATTGGGAGCCGTGTGGTCTATTTTCCTCAAGGTCACAGTGAGCAGGTGGCTGCCTCTACAAACAAGGAAGTGGATGCTCATATACCTAATTATCCAACCTTCCTCCTCAACTAATCTGCCAACTTCACAATGTCACAATGCATGCCGATGTTGAGACAGATGAAGTATATGCTCAAATGACATTGCAGCCATTGAACCTGCAAGAACAAAGGGAACCGTCTAGTCTAG

Ace file of the UniGene sp_v2.0_unigene64932

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Putative auxin response factor 6 n=1 Tax=Amborella trichopoda RepID=E0WD84_AMBTC	-	-	88%
FL-Next	tr=Putative auxin response factor 3/4; Pinus pinaster (Maritime pine).	-	-	77%
Blast2go	auxin response factor 6-like	-	-	92%

Source	GOs	Term	Type	Identity
Blast2go	cellular process	GO:0009987	Biological Process	92%
Blast2go	flower development	GO:0009908	Biological Process	92%
Blast2go	response to auxin stimulus	GO:0009733	Biological Process	92%

Source	InterPros	Term	Type	Identity
Sma3	Aminotransferase, class-II, pyridoxal-phosphate binding site	IPR001917	-	-
Sma3	AUX/IAA protein	IPR003311	-	-
Sma3	B3 DNA binding domain	IPR003340	-	-
Sma3	Auxin response factor	IPR010525	-	-
Sma3	Aux/IAA-ARF-dimerisation	IPR011525	-	-

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: E1UHY2

Fln msg: Separated hits, possible frame ERROR between 387 and 435, Distance to subject end: 756 aas, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 113 - 919

Fln protein: MRLSSSGFSQQPQEGERRSLNSELWHACAGPLVSLPAIGSRVVYFPQGHSEQVxxxxxxxxxxxxxxxxxLPPQLICQLHNVTMHADVETDEVYAQMTLQPLNLQEQREPSSL

Protein Length: 114

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGTTTAGTGGGAATTAGAAACTCTCAGAAACCTCCTCACTCAAGAGGATATCTGGAGGCGATTATCAGCGTGGAGTAGGTTAATTCTTTGTCATAATTAAGCAGGTAAGTAGGGAATTAAGGAAGGAAATCTGAGGAGTAGATTCTCTTGAAGGATTTCGTGTCTTGTCTTGTTGGGAAGAAATTGAGAGTCTATACACACA_-_ATGAGGCTGTCCTCCTCGGGCTTCTCTCAGCAGCCTCAAGAAGGGGAAAGGAGAAGTCTTAATTCAGAGCTGTGGCATGCCTGTGCCGGGCCCCTTGTATCTCTACCTGCAATTGGGAGCCGTGTGGTCTATTTTCCTCAAGGTCACAGTGAGCAGGTGGCxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxCCTTCCTCCTCAACTAATCTGCCAACTTCACAATGTCACAATGCATGCCGATGTTGAGACAGATGAAGTATATGCTCAAATGACATTGCAGCCATTGAACCTGCAAGAACAAAGGGAACCGTCTAGTCTAG

Fln Alignment:

AllPineV4_rep_c85439___SLNSELWHACAGPLVSLPAIGSRVVYFPQGHSEQVAxxxxxxxxxxxxxxxxLPPQLICQLHNVTMHADVETDEVYAQMTLQP
E1UHY2_______________SVCPELWHACAGPLISLPPKGSRVVYFPQGHLEQIAxxxxxxxxxxxxxxxxLPPQILCRVLNVNLHADQEMDEVYAQLTLVP

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain