SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene64599

Length: 593 nt

Origin of reads: Biogeco3 v1 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene64599 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Beta-glucosidase n=1 Tax=Pinus contorta RepID=Q9ZT64_PINCO	-	-	56%
FL-Next	tr=Beta-glucosidase; Pinus contorta (Shore pine) (Lodgepole pine).	-	-	56%
Blast2go	beta-glucosidase 11-like	-	-	68%

Source	InterPros	Term	Type	Identity
Sma3	Pectinesterase, catalytic	IPR000070	-	-
Sma3	Glycoside hydrolase, family 1	IPR001360	-	-
Sma3	Glycoside hydrolase, subgroup, catalytic domain	IPR013781	-	-
Sma3	Glycoside hydrolase, family 1, beta-glucosidase	IPR017736	-	-
Sma3	DNA methylase, C-5 cytosine-specific, active site	IPR018117	-	-
Sma3	Glycoside hydrolase, family 1, active site	IPR018120	-	-

Full-Lengther Next Prediction

SNPs (tot: 3)

Position	A %	C %	G %	T %	Probability
146		66		33	0.997452
150	33			66	0.997452
171	75		25		0.996474

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain