SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene64339

Length: 625 nt

Origin of reads: Biogeco1 v2 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene64339

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Phosphatase-like protein n=4 Tax=Arabidopsis RepID=Q940K2_ARATH	-	-	61%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	34%
Blast2go	map kinase phosphatase	-	-	75%

Source	ECs	Term	Type	e value	Identity
Blast2go	Hydrolases, Acting on ester bonds, Phosphoric monoester hydrolases.	EC:3.1.3.-	-	0.0	75%

Source	KEGGs	Term	Identity
Blast2go	Fructose and mannose metabolism	00051	75%
Blast2go	Ascorbate and aldarate metabolism	00053	75%
Blast2go	Lipopolysaccharide biosynthesis	00540	75%
Blast2go	Ether lipid metabolism	00565	75%
Blast2go	Sphingolipid metabolism	00600	75%
Blast2go	Thiamine metabolism	00730	75%
Blast2go	Riboflavin metabolism	00740	75%
Blast2go	Nicotinate and nicotinamide metabolism	00760	75%
Blast2go	Metabolic pathways	01100	75%
Blast2go	Biosynthesis of secondary metabolites	01110	75%

Source	GOs	Term	Type	Identity
Blast2go	response to UV-C	GO:0010225	Biological Process	75%
Blast2go	response to salt stress	GO:0009651	Biological Process	75%
Blast2go	phosphatase activity	GO:0016791	Molecular Function	75%

Source	InterPros	Term	Type	Identity
Sma3	Dual specificity phosphatase, catalytic domain	IPR000340	-	-
Sma3	Protein-tyrosine/Dual-specificity phosphatase	IPR000387	-	-
Sma3	Phosphotransferase system, HPr serine phosphorylation site	IPR002114	-	-
Sma3	Gelsolin domain	IPR007123	-	-
Sma3	Protein-tyrosine phosphatase, active site	IPR016130	-	-

Full-Lengther Next Prediction

SNPs (tot: 9)

Position	A %	C %	G %	T %	Probability
58	75		25		0.996473
197	60		40		1.0
269			60	40	1.0
363			75	25	0.996473
434		16		83	0.994512
436		16		83	0.994512
443			83	16	0.994512
446		16	83		0.994512
447	16		83		0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain