SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene64018

Length: 718 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene64018

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	monooxygenase, FAD-binding [Nostoc punctiforme PCC 73102] gb\|ACC80836.1\| monooxygenase, FAD-binding [Nostoc punctiforme PCC 73102]	-	-	2.0e-07	28%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	92%
Blast2go	fad-dependent oxidoreductase	-	-	0.0	64%

Source	InterPros	Term	Type	e value	Identity
Sma3	Monooxygenase, FAD-binding	IPR002938	-	0.0	-
Sma3	Aromatic-ring hydroxylase-like	IPR003042	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 11)

Position	A %	C %	G %	T %	Probability
345	80	20			0.995493
348	80	20			0.995493
353		20		80	0.995493
354		20	80		0.995493
355		80		20	0.995493
356	80			20	0.995493
358		80	20		0.995493
365	80	20			0.995493
366	80			20	0.995493
368	20	80			0.995493
584			25	75	0.996473

SSRs (tot: 1)

Start position	End position	Sequence	Length
408	420	AG AG AG AG AG AG A	13

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain