SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene63985

Length: 416 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene63985
TTTCTACAGCTATTGATGGAAAGACCAAAGCTTGGTTGTATGATCTTGCGGGATCTAGGGTGGACTATAATGCTCCTGGCCTTTGGTGCACTACAATGGCTTGTAGTGCTGATGGAGCAAGGCTCTTCTCCTGTAAAACAAGTAAAGATGGTGATTCCTACGTGTTTGAGTGGAATGAAAGTGAGGGAACTATCAAGTTGGCATATTCTGGTTTTAGGAAGCGTTCCTTAGGTGTTGTGCAATTTGATACAACCAGGAATAGGCTCTTGGCAGCTGGTGATGAATTTCAAATAAGTTCTGGGACATGGATAACACCAATATCCTGACAACAATTGATGTTGAGGGCAGTTCGCTCCAGGCTAGTCCTCGCCTTCGTTTCAGTAAAGATGGTTCCCTGTTGGCAGTCACAACACATT

Ace file of the UniGene sp_v2.0_unigene63985 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Unassigned protein	-	-	-
FL-Next	sp=Topless-related protein 1; Arabidopsis thaliana (Mouse-ear cress).	-	-	76%
Blast2go	ramosa 1 enhancer locus 2	-	-	85%

Source	InterPros	Term	Type	Identity
Sma3	Histidine phosphatase superfamily, clade-2	IPR000560	-	-
Sma3	WD40 repeat	IPR001680	-	-
Sma3	LisH dimerisation motif	IPR006594	-	-
Sma3	CTLH, C-terminal LisH motif	IPR006595	-	-
Sma3	LisH dimerisation motif, subgroup	IPR013720	-	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	F-box associated interaction domain	IPR017451	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-
Sma3	Cytochrome b5, heme-binding site	IPR018506	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-
Sma3		IPR019782	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q0WV90

Fln msg: Overlapping hits, possible frame ERROR between 293 and 287, Distance to subject end: 459 aas, your sequence is shorter than subject: 138 - 1120

Fln protein: STAIDGKTKAWLYDLAGSRVDYNAPGLWCTTMACSADGARLFSCKTSKDGDSYVFEWNESEGTIKLAYSGFRKRSLGVVQFDTTRNRLLAAGDExxxxFWDMDNTNILTTIDVEGSSLQASPRLRFSKDGSLLAVTTH

Protein Length: 139

Fln nts: TTTCTACAGCTATTGATGGAAAGACCAAAGCTTGGTTGTATGATCTTGCGGGATCTAGGGTGGACTATAATGCTCCTGGCCTTTGGTGCACTACAATGGCTTGTAGTGCTGATGGAGCAAGGCTCTTCTCCTGTAAAACAAGTAAAGATGGTGATTCCTACGTGTTTGAGTGGAATGAAAGTGAGGGAACTATCAAGTTGGCATATTCTGGTTTTAGGAAGCGTTCCTTAGGTGTTGTGCAATTTGATACAACCAGGAATAGGCTCTTGGCAGCTGGTGATGAAxxxxxxxxxxxxTTCTGGGACATGGATAACACCAATATCCTGACAACAATTGATGTTGAGGGCAGTTCGCTCCAGGCTAGTCCTCGCCTTCGTTTCAGTAAAGATGGTTCCCTGTTGGCAGTCACAACACATT

Fln Alignment:

AllPineV4_rep_c81407___STAIDGKTKAWLYDLAGSRVDYNAPGLWCTTMACSADGARLFSCKTSKDGDSYVFEWNESEGTIKLAYSGFRKRSLGVVQFDTTRNRLLAAGDEFxxKFWDMDNTNILTTIDVEGSSLQASPRLRFSKDGSLLAVTTH
Q0WV90_______________STALDGKIKAWLYDNMGSRVDYEAPGRWCTTMAYSADGTRLFSCGTSKDGESFIVEWNESEGAVKRTYQGFHKRSLGVVQFDTTKNRYLAAGDDFxxKFWDMDTIQLLTAIDADGG-LQASPRIRFNKEGSLLAVSAN

SNPs (tot: 3)

Position	A %	C %	G %	T %	Probability
301		80	20		0.995493
354		33		66	0.997452
406	66			33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain