SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene63937

Length: 833 nt

Origin of reads: Biogeco3 v1 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene63937

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	3-ketoacyl-CoA synthase n=1 Tax=Sorghum bicolor RepID=C5YW23_SORBI	-	-	56%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	74%
Blast2go	3-ketoacyl- synthase 9	-	-	74%

Source	GOs	Term	Type	Identity
Blast2go	response to cold	GO:0009409	Biological Process	74%
Blast2go	very long-chain fatty acid metabolic process	GO:0000038	Biological Process	74%
Blast2go	cuticle development	GO:0042335	Biological Process	74%
Blast2go	response to light stimulus	GO:0009416	Biological Process	74%

Source	InterPros	Term	Type	Identity
Sma3	ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain	IPR000194	-	-
Sma3	TonB box, conserved site	IPR010916	-	-
Sma3	Chalcone/stilbene synthase, C-terminal	IPR012328	-	-
Sma3	Very-long-chain 3-ketoacyl-CoA synthase	IPR012392	-	-
Sma3	FAE1/Type III polyketide synthase-like protein	IPR013601	-	-
Sma3	3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C-terminal	IPR013747	-	-
Sma3	Thiolase-like, subgroup	IPR016038	-	-
Sma3	Gonadotropin, beta subunit, conserved site	IPR018245	-	-
Sma3	Ribosomal protein S10, conserved site	IPR018268	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5A7W7

Fln msg: Distance to subject end: 18 aas, atg_distance in limit (1-15): atg_distance = 10, W2: There is no M at the beginning, your sequence is shorter than subject: 277 - 305

Fln protein: VKTFNLSGLGCSASLIAVDMAKDLFKVYRGSYALVIGSENITANAQYRGNCKSMMVTNCLFRVGGYALLLSNKGNDAGRAKMRLLHAVRTNVAAVDEAYDCVMVKEDDEGLSGVSLSPLLMDVAGDAVRKNMATLGPRVLPITEQLYYVYNMICIKALKMNLKPYIPNFSLAFQHFCVHPGGRGVINAIGKSLQLTDYELEPSRMALHRFGNTSVSGVWYEAAYMEAQRRFKVGDRIWQIGLGSGFKCNSAVWEVMRETHPLQSTSLGMSGSTGIPT

Protein Length: 278

Fln nts: GTGAAGACCTTCAATCTCTCCGGCCTGGGTTGCAGCGCCAGCCTTATAGCGGTGGACATGGCCAAGGACCTTTTCAAGGTCTATCGTGGCTCCTATGCTCTGGTAATCGGCAGCGAGAACATAACGGCCAACGCCCAGTATCGGGGCAACTGTAAGTCCATGATGGTCACCAACTGTCTCTTCAGAGTCGGTGGCTACGCGTTGCTTCTGTCGAACAAAGGCAACGACGCAGGCCGGGCAAAGATGAGGCTCCTTCACGCGGTCAGGACGAACGTGGCAGCCGTGGATGAGGCCTACGACTGCGTAATGGTAAAGGAAGACGACGAGGGGCTCTCTGGCGTTTCCCTCAGTCCGTTACTCATGGACGTGGCGGGAGACGCTGTGAGGAAGAACATGGCCACGTTGGGCCCCAGAGTGCTCCCGATAACGGAGCAGCTCTACTACGTCTACAACATGATATGCATCAAGGCCTTGAAGATGAATTTGAAGCCTTATATTCCTAATTTCAGTCTCGCCTTCCAGCATTTCTGCGTCCATCCCGGGGGTCGAGGTGTGATCAACGCTATCGGGAAGAGCCTGCAACTAACTGACTACGAACTGGAGCCTTCTCGCATGGCGCTGCATCGCTTCGGGAACACTTCTGTGAGCGGGGTCTGGTATGAAGCGGCTTACATGGAAGCCCAGCGACGGTTTAAGGTGGGGGATCGCATTTGGCAGATAGGACTGGGTTCCGGATTCAAGTGTAACAGCGCAGTGTGGGAAGTGATGAGAGAAACCCATCCTTTGCAGAGCACTAGTTTAGGGATGAGTGGATCCACAGGTATCCCTACATT

Fln Alignment:

AllPineV4_rep_c81127___VKTFNLSGLGCSASLIAVDMAKDLFKVYRGSYALVIGSENITANAQYRGNCKSMMVTNCLFRVGGYALLLSNKGNDAGRAKMRLLHAVRTNVAAVDEAYDCVMVKEDDEGLSGVSLSPLLMDVAGDAVRKNMATLGPRVLPITEQLYYVYNMICIKALKMNLKPYIPNFSLAFQHFCVHPGGRGVINAIGKSLQLTDYELEPSRMALHRFGNTSVSGVWYEAAYMEAQRRFKVGDRIWQIGLGSGFKCNSAVWEVMRETHPLQS
D5A7W7_______________VKTFNLSGMGCSANVIAVDMAKDLFKIYHDSYALVVGTENTTVNANYGGSDKAMMLTNCLFRVGGNAVLLSNKAKDAARAKMKLLHVVRTNVAADDEAYGCVMSKEDAEGFYGIGLRQSLIEVAGNAVRKNMTTLGSKVLPITELLYYAYNVFCIKALKRNLKPYIPNFRLAFSHFCIHPGGRAVVNGVGKNLRLSDYDLEPSRMALHRFGNTSTSGLWYEVAYLEAKRRFKVGDRVWQIGLGSGFKCNSAVWEVMNETKPREA

SNPs (tot: 22)

Position	A %	C %	G %	T %	Probability
151	37			62	1.0
152	37		62		1.0
191		37	62		1.0
279	71	28			1.0
282		85		14	0.993533
306	66		33		1.0
350	75		25		0.996473
351	25		75		0.996473
358	75	25			0.996479
363		33		66	0.997452
401		83		16	0.994512
414	50	50			1.0
416	50		50		1.0
426		50	50		1.0
449		50		50	1.0
458		50		50	1.0
513			50	50	1.0
554		33	66		0.997452
555		33		66	0.997452
562	66		33		0.997452
577	66		33		0.997452
668		66		33	0.997457

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain