SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene63904

Length: 693 nt

Origin of reads: Biogeco1 v2 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene63904 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	HIT zinc finger and PAPA-1-like domain-containing protein [Arabidopsis thaliana] dbj\|BAC42342.1\| unknown protein [Arabidopsis thaliana] gb\|AEE33398.1\| HIT zinc finger and PAPA-1-like domain-containing protein [Arabidopsis thaliana]	-	-	1.0e-24	64%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	62%
Blast2go	protein	-	-	6.77034e-34	78%

Source	InterPros	Term	Type	Identity
Sma3	Tetratricopeptide TPR-1	IPR001440	-	-
Sma3	Pectinesterase inhibitor	IPR006501	-	-
Sma3	PAPA-1-like conserved region	IPR006880	-	-
Sma3	Zinc finger, HIT-type	IPR007529	-	-
Sma3	Tetratricopeptide repeat-containing domain	IPR013026	-	-
Sma3	Tetratricopeptide repeat	IPR019734	-	-

Full-Lengther Next Prediction

SNPs (tot: 17)

Position	A %	C %	G %	T %	Probability
526		16		83	0.994512
528		83	16		0.994512
535	16		83		0.994512
539		16		83	0.994512
542		16		83	0.994512
545	83	16			0.994512
546			16	83	0.994512
584	25		75		0.996473
665	66			33	0.997452
667		33		66	0.997453
671	66			33	0.997452
673	66	33			0.997452
676		33	66		0.997453
683	66			33	0.997452
684	66		33		0.997453
686	66			33	0.997453
687		66		33	0.997453

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain