SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene63873

Length: 617 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene63873 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Serine carboxypeptidase, putative n=1 Tax=Ricinus communis RepID=B9SCQ7_RICCO	-	-	7.0e-19	70%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	41%
Blast2go	serine carboxypeptidase-like 30	-	-	3.09934e-22	68%

Source	InterPros	Term	Type	e value	Identity
Sma3	Peptidase S10, serine carboxypeptidase	IPR001563	-	0.0	-
Sma3	Peptidase S10, serine carboxypeptidase, active site	IPR018202	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 19)

Position	A %	C %	G %	T %	Probability
543	50	16	16		0.988986
544	60	20		20	0.99255
545		16	66		0.988813
546	20	40		40	1.0
547	40		60		1.0
548			66	33	1.0
549		25	75		0.996473
550	20	20	60		0.992609
551	75	25			0.996473
552	40			60	1.0
554		20	80		0.995505
555		20	60	20	0.992586
556	80	20			0.995496
559		80	20		0.9955
561		20	80		0.9955
563		40	60		1.0
565	25			75	0.996481
566	75	25			0.996481
588	66	33			0.997453

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain