SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene63842

Length: 844 nt

Origin of reads: Biogeco3 v1 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene63842

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	protein disulfide isomerase (PDI)-like protein 2 [Cucumis melo]	-	-	51%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	77%
Blast2go	protein	-	-	76%

Source	InterPros	Term	Type	Identity
Sma3	Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant	IPR000866	-	-
Sma3	Enolpyruvate transferase domain	IPR001986	-	-
Sma3	Protein kinase C-like, phorbol ester/diacylglycerol binding	IPR002219	-	-
Sma3	C1-like	IPR011424	-	-
Sma3		IPR012335	-	-
Sma3	Redoxin	IPR013740	-	-
Sma3	Thioredoxin domain	IPR013766	-	-
Sma3		IPR017936	-	-
Sma3	Thioredoxin, conserved site	IPR017937	-	-
Sma3	Peptidase S26A, signal peptidase I, conserved site	IPR019758	-	-

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NX69

Fln msg: warning!, putative chimeric sequence! or repetitive structureDistance to subject end: 48 aas, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 266 - 387

Fln protein: CNLQVKVEELEGKYVGLYFSAHWCPPCRHFTPVLSEIYKKLSEKEDFEIVFISADRDEKSFEEYHHTMPWLALPFSDEDTRKLLNHAFQVDGIPCLVVLDKEGRVITTEGVDIIVEYGVEGYPFTAERLDELRAKDEALRAAQTVESLLLSDERDFVLGHGGRKVPVAELVGKTIGLYFSAHWCPPCQSFTPKLVKVYNELQERGEAFEVVFISSDDDQKAFEDYYKTMPWLALPLGDKIDKDLSELFCVRHIPSLIVVGPDGKTV

Protein Length: 267

Fln nts: ATTGTTCATTTTGCTCGAAATTTTCATCCTTACATTGAATTTA_-_ATGTAATCTACAGGTGAAAGTTGAAGAACTGGAAGGGAAATATGTGGGCCTGTACTTTTCTGCCCATTGGTGTCCTCCATGCAGGCATTTCACCCCCGTTTTGTCCGAAATCTATAAAAAATTATCGGAGAAGGAGGACTTCGAGATTGTCTTCATTTCTGCAGATCGTGATGAGAAGTCTTTTGAGGAATACCACCACACCATGCCATGGCTTGCCCTGCCATTCTCAGATGAGGATACGAGGAAACTGCTTAATCATGCTTTTCAGGTTGATGGCATTCCGTGCCTTGTTGTTCTGGACAAAGAGGGCAGAGTTATAACCACTGAAGGTGTGGACATCATTGTAGAATATGGTGTTGAGGGTTATCCATTCACTGCAGAGAGACTTGATGAACTGAGGGCCAAAGATGAGGCCTTAAGGGCTGCACAGACGGTGGAGTCCCTTCTGCTGTCTGATGAACGAGATTTTGTCCTTGGCCATGGAGGAAGAAAGGTCCCGGTCGCTGAGCTTGTGGGGAAGACAATTGGTTTGTATTTCTCTGCTCATTGGTGCCCACCTTGCCAAAGTTTTACTCCAAAGCTTGTAAAGGTATACAACGAACTCCAGGAAAGAGGAGAAGCGTTTGAGGTTGTTTTCATCTCGAGTGACGATGATCAAAAGGCTTTTGAAGATTACTACAAAACCATGCCATGGTTGGCTCTTCCATTAGGAGATAAAATTGATAAGGATCTCTCTGAGCTTTTCTGTGTTAGACATATACCATCGTTGATTGTGGTGGGTCCAGATGGAAAAACTGTGAC

Fln Alignment:

AllPineV4_rep_c80693___QVKVEELEGKYVGLYFSAHWCPPCRHFTPVLSEIYKKLSEKEDFEIVFISADRDEKSFEEYHHTMPWLALPFSDEDTRKLLNHAFQVDGIPCLVVLDKEGRVITTEGVDIIVEYGVEGYPFTAERLDELRAKDEALRAAQTVESLLLSDERDFVLGHGGRKVPVAELVGKTIGLYFSAHWCPPCQSFTPKLVKVYNELQERGEAFEVVFISSDDDQKAFEDYYKTMPWLALPLGDKIDKDLSELFCVRHIPSLIVVGPDGKTV
A9NX69_______________KVKVEELEGKYVGLYFSAHWCPPCRYFTPVLSEIYKKLLEKGDFEIVFISADRDEKSFEEYHHTMPWLALPFSDENTRKKLDQVFKVDGIPCLVFLDKEGRAITTEGVETIGEYGVEAYPFTAERIDELKAKEEALRAAQTVESLLLSDERDFVLGHEGTQVPVAELAGKTVGLYFSAHWCGPCRSFTPQLVEIYNELLKKGEAFEIVFLSRDKEEKAFEEYYASMPWLALPFADNTQKKLSRYFRIEGIPTLIILGSDGKTI

SNPs (tot: 20)

Position	A %	C %	G %	T %	Probability
545	33	66			1.0
551		33	66		1.0
556			16	66	0.988813
557		16	83		0.994513
558		16	66	16	0.988815
559			83	16	0.994513
560			83	16	0.994513
561	66	16			0.988813
562	83			16	0.994512
563		33	66		1.0
564	83			16	0.994512
567	60		20	20	0.99255
568		16		83	0.994512
569	16			83	0.994512
571		20	80		0.995493
572		20		80	0.995493
575		20	80		0.995493
587		50		50	1.0
614		20		80	0.995505
689		25		75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain