SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene63820

Length: 503 nt

Origin of reads: Uagpf v2

UniGene Fasta

>sp_v2.0_unigene63820
CGTCGTGACCTTGGCTGTCACTCAATCTAAAAATGGCTCCCTCCCTCCATCAAGATTTCTCTGAAATTACGCAGATGTCGTCTAACACCAGTGGTCGTCGTGACCTTGGCTGTCACTCACATGCGCTGCCTGCAAGATGTTACGAAGAAGATGTGGAGAGAAATGCATGCTTGCTCCTTACTTCCCATCAAACGACCTTCACAAATTCGCTACAGCACACAGAATATTTGGAGCAAGCAATATCATAAAATTACTTCAGGATCTGCCAGCTGAGCGGCGAACAGATGCAGTAAGCAGCATGGTATATGAAGCGCACGCAAGGCTTCGAGATCCTGTATATGGTTGCGCAGGAATAGTTTGCCAGATGCAGTCCCAACTCTGTCAGTTGCAATCACAGTTAGCTACAGCCCAGGCAGAGATTCTAACCATGCGCTTGCAACAGGCTAATCTTCTTGCACTCGTCTCCGCTTCTGCAGAGAAAGGGGAAATAACTCGACCACTTT

Ace file of the UniGene sp_v2.0_unigene63820

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	LOB domain protein 1, putative n=1 Tax=Solanum demissum RepID=Q6L463_SOLDE	-	-	3.0e-34	63%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	88%
Blast2go	lob domain-containing protein 1-like	-	-	0.0	83%

Source	InterPros	Term	Type	Identity
Sma3	Oleosin	IPR000136	-	-
Sma3	Peptidase, cysteine peptidase active site	IPR000169	-	-
Sma3	Hydroxymethylglutaryl-CoA reductase, class I/II	IPR002202	-	-
Sma3	Lateral organ boundaries, LOB	IPR004883	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	Uncharacterised conserved protein UCP038127, LOB	IPR017394	-	-
Sma3	Asymmetric leaves, AS2/LOB	IPR017414	-	-
Sma3	DNA methylase, N-4 cytosine-specific, conserved site	IPR017985	-	-

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NTB0

Fln msg: Distance to subject end: 38 aas, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 122 - 180

Fln protein: MLRRRCGEKCMLAPYFPSNDLHKFATAHRIFGASNIIKLLQDLPAERRTDAVSSMVYEAHARLRDPVYGCAGIVCQMQSQLCQLQSQLATAQAEILTMRLQQANLLALVSASAEKGEITRPL

Protein Length: 123

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATCTAAAAATGGCTCCCTCCCTCCATCAAGATTTCTCTGAAATTACGCAGATGTCGTCTAACACCAGTGGTCGTCGTGACCTTGGCTGTCACTCACATGCGCTGCCTGCAAG_-_ATGTTACGAAGAAGATGTGGAGAGAAATGCATGCTTGCTCCTTACTTCCCATCAAACGACCTTCACAAATTCGCTACAGCACACAGAATATTTGGAGCAAGCAATATCATAAAATTACTTCAGGATCTGCCAGCTGAGCGGCGAACAGATGCAGTAAGCAGCATGGTATATGAAGCGCACGCAAGGCTTCGAGATCCTGTATATGGTTGCGCAGGAATAGTTTGCCAGATGCAGTCCCAACTCTGTCAGTTGCAATCACAGTTAGCTACAGCCCAGGCAGAGATTCTAACCATGCGCTTGCAACAGGCTAATCTTCTTGCACTCGTCTCCGCTTCTGCAGAGAAAGGGGAAATAACTCGACCACTTT

Fln Alignment:

AllPineV4_rep_c80534___CAACKMLRRRCGEKCMLAPYFPSNDLHKFATAHRIFGASNIIKLLQDLPAERRTDAVSSMVYEAHARLRDPVYGCAGIVXXXXXXXXXXXXXXXXXXXEILTMRLQQANLLALVSASAEKGEITRPL
A9NTB0_______________CAACKILRRRCGEKCVLAPYFPSNDLHKFATAHRIFGASNIIKLLQELPAEGRTDAVSSMVYEANARLRDPLYGCAGIVFQMQSQLSQLQSQLATAQAEILTMRLQQANLLALITGSADSGETTRPL

SNPs (tot: 25)

Position	A %	C %	G %	T %	Probability
96		57		42	1.0
97			57	42	1.0
99	42	57			1.0
101	42			57	1.0
103	57	42			1.0
106	42			57	1.0
112		50	50		1.0
113		50		50	1.0
115	50			50	1.0
119	50	50			1.0
120		57		42	1.0
185			25	75	1.0
188		75	25		1.0
189		75		25	1.0
190	75		25		1.0
191	25			75	1.0
194	75	25			1.0
195	72			27	1.0
196		72		27	1.0
198	72		27		1.0
200		72		27	1.0
201			25	75	1.0
379	85			14	0.993533
380	85			14	0.993533
382			14	85	0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain