SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene63780

Length: 744 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene63780

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Thaumatin-like protein n=1 Tax=Pinus taeda RepID=A5HIY3_PINTA	-	-	78%
FL-Next	tr=Thaumatin-like protein; Pinus taeda (Loblolly pine).	-	-	96%
Blast2go	thaumatin-like protein	-	-	79%

Source	InterPros	Term	Type	e value	Identity
Sma3	Thaumatin, pathogenesis-related	IPR001938	-	0.0	-
Sma3	Thaumatin, conserved site	IPR017949	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 42)

Position	A %	C %	G %	T %	Probability
69	50		50		1.0
70	50			50	1.0
75	50		50		1.0
76		50	50		1.0
77		50	50		1.0
78		50		50	1.0
79	50			50	1.0
82		50	50		1.0
85	50			50	1.0
86		50	50		1.0
89	50			50	1.0
90		50		50	1.0
91	50		50		1.0
148	40	60			1.0
149	20		80		0.995493
179		16	83		0.994512
182	83	16			0.994512
192		83		16	0.994512
199	83			16	0.994512
201	16			83	0.994512
202		16	83		0.994512
205		16	83		0.994512
206	16			83	0.994512
217	80		20		0.995493
248	20		80		0.995493
294		75		25	1.0
401			71	28	1.0
447		10	90		0.90298
450		88	11		0.923564
451	87		12		0.992554
452	87	12			0.992554
454	87		12		0.992554
455		87		12	0.992554
457	12	87			0.992554
471		25		75	1.0
474		75		25	1.0
504		75	25		1.0
515		71	14	14	0.984337
518	71		14	14	0.984337
672		66	33		0.997453
701		66		33	0.997452
717	33		33	33	0.997752

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain