SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene63778

Length: 683 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uagpf v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene63778 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	cinnamoyl-CoA reductase-like protein [Arabidopsis thaliana]	-	-	3.0e-21	62%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	97%
Blast2go	cinnamoyl- reductase-like protein	-	-	2.158e-43	79%

Source	GOs	Term	Type	e value	Identity
Blast2go	metabolic process	GO:0008152	Biological Process	2.158e-43	79%
Blast2go	response to karrikin	GO:0080167	Biological Process	2.158e-43	79%

Source	InterPros	Term	Type	Identity
Sma3	Ribosome-binding factor A	IPR000238	-	-
Sma3	Phosphoenolpyruvate carboxykinase, ATP-utilising	IPR001272	-	-
Sma3	NAD-dependent epimerase/dehydratase	IPR001509	-	-
Sma3	WD40 repeat	IPR001680	-	-
Sma3	Phosphoenolpyruvate carboxykinase, C-terminal	IPR013035	-	-
Sma3	Small-subunit processome, Utp13	IPR013934	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-
Sma3	Ribosomal protein S2, conserved site	IPR018130	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-
Sma3		IPR019782	-	-

Full-Lengther Next Prediction

SNPs (tot: 19)

Position	A %	C %	G %	T %	Probability
305		66		33	0.997453
306		66	33		0.997453
307	33	66			0.997453
308		66	33		0.997453
309	66			33	0.997452
310	66		33		0.997452
311	33		66		0.997452
312		33		66	0.997455
313	33			66	0.997455
314			33	66	0.997456
315		33		66	0.997457
317	33			66	0.997452
318	33			66	0.997452
320			33	66	0.997452
321			66	33	0.997452
323	33	66			0.997452
325		66	33		0.997452
326	33			66	0.997452
328	66		33		0.997452

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain