SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene63777

Length: 1066 nt

Origin of reads: Biogeco1 v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene63777

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Clavata-like receptor n=1 Tax=Picea glauca RepID=Q19AV8_PICGL	-	-	79%
FL-Next	tr=Clavata-like receptor; Picea glauca (White spruce) (Pinus glauca).	-	-	81%
Blast2go	leucine-rich repeat receptor-like protein kinase	-	-	78%

Source	InterPros	Term	Type	Identity
Sma3	Alpha/beta hydrolase fold-1	IPR000073	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Enolpyruvate transferase domain	IPR001986	-	-
Sma3	Peptidase S33	IPR002410	-	-
Sma3	Leucine-rich repeat, typical subtype	IPR003591	-	-
Sma3	Aminotransferases, class-I, pyridoxal-phosphate-binding site	IPR004838	-	-
Sma3	Retrotransposon gag protein	IPR005162	-	-
Sma3	Proline iminopeptidase	IPR005944	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	HTH domain AraC-type, conserved site	IPR018062	-	-
Sma3	Aldo/keto reductase, conserved site	IPR018170	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: Q19AV8

Fln msg: your sequence is shorter than subject: 300 - 998

Fln protein: MGDEDNVIGSGGAGKVYKATLSNGEIVAIKRLWTSAKSDASNDNGFKAEVETLGKIRHRNIVKLWCCFSSSDFNLLVYEYMHNGSLGDLLHGSKASVLDWPIRYKIALEAAQGLAYLHHDCEPPIVHRDVKSNNILLDDDYGARVADFGVAKILQSCGKGVDSMSAIAGSYGYIAPEYAYTLKVDEKSDIYSYGVVILELVTGRRTIDPEFGDNKDLVKWVCTQIEQKNELHKVLDPKLVDCFKEEMTMVLKVGLLCTSALPINRPSMRRVVDMLREANPQHKAKAKAVAKDGKEPQYY*

Protein Length: 301

Fln nts: ATGGGGGATGAAGATAATGTCATTGGAAGTGGCGGAGCCGGTAAGGTTTACAAGGCCACGTTGAGCAATGGTGAAATTGTGGCTATCAAGAGGCTTTGGACTAGTGCTAAAAGCGATGCTTCCAATGACAATGGTTTCAAAGCAGAGGTGGAAACACTAGGGAAGATCAGGCACAGGAACATTGTGAAGCTATGGTGTTGTTTTAGTAGCAGCGATTTCAATCTGTTGGTCTACGAGTACATGCATAATGGGAGTCTGGGTGATCTACTTCATGGATCTAAAGCTAGTGTTCTTGACTGGCCCATAAGATACAAGATTGCCCTTGAAGCAGCTCAGGGGCTCGCATATCTTCATCATGATTGTGAGCCACCGATTGTTCACAGAGACGTGAAATCCAATAATATCTTGCTGGATGATGATTATGGGGCTCGTGTTGCAGATTTCGGCGTTGCCAAAATTCTGCAGAGCTGTGGCAAAGGGGTTGATTCTATGTCTGCAATTGCCGGTTCCTATGGCTACATAGCTCCAGAGTATGCGTATACACTTAAGGTGGACGAAAAGAGTGACATCTATAGTTATGGAGTGGTGATCTTGGAGCTGGTGACCGGCAGGCGAACAATAGATCCAGAATTTGGAGATAACAAAGATCTTGTGAAGTGGGTGTGCACTCAGATAGAGCAAAAGAATGAATTGCACAAGGTGTTGGATCCCAAGCTTGTGGATTGTTTCAAAGAGGAAATGACCATGGTTTTAAAGGTAGGACTCCTCTGCACAAGCGCCCTGCCCATCAACAGGCCATCAATGAGAAGGGTGGTAGATATGCTACGGGAAGCCAATCCCCAGCACAAGGCCAAGGCCAAGGCGGTTGCCAAGGATGGAAAAGAGCCTCAATATTATTAA___GAACCCGCGACTTGCATTTTACTGGCATGATGCTAATTGCATTTGATCTAAACTTCTAGACTTTTCTTCTTTGCAGGCCCCTGTATTTACTGCCAATTGTAGTTACTGTGTGTTTGGGCTTGTTCTCGTATACCTTTCAATCGAGATTGTCTATCGATGCTCGATG

Fln Alignment:

AllPineV4_rep_c80252___DEDNVIGSGGAGKVYKATLSNGEIVAIKRLWTSAKSDASNDNGFKAEVETLGKIRHRNIVKLWCCFSSSDFNLLVYEYMHNGSLGDLLHGSKASVLDWPIRYKIALEAAQGLAYLHHDCEPPIVHRDVKSNNILLDDDYGARVADFGVAKILQSCGKGVDSMSAIAGSYGYIAPEYAYTLKVDEKSDIYSYGVVILELVTGRRTIDPEFGDNKDLVKWVCTQIEQKNELHKVLDPKLVDCFKEEMTMVLKVGLLCTSALPINRPSMRRVVDMLREANPQHXXXXXXXXXDGKEPQYY*EPAT
Q19AV8_______________DEDNVIVSDGASNVYKATLNNGELLAIKRLWSIYKTNASNDNGFQAEVDTLGKIRHKNIVKLWCCCSKSDSNLLVYEYMPNGSLGDLLHGPKASVLDWPIRYKIALGAAQGLAYLHHGCVPAIVHRDVKSNNILLDEDYVAHVADFGVAKILQSCARGADSMSAIAGSYGYIAPEYAYTLKVNEKSDIYSFGVVILELVTGRRPVDPEFGENKDLVKWLCNKIEKKNGLHEVLDPKLVDCFKEEMTMVMRVGLLCTSVLPINRPSMRRVVEMLQEANPHH--KAKATGKDGKLSPYYCEEPT

SNPs (tot: 17)

Position	A %	C %	G %	T %	Probability
387		75		25	0.996473
388	75		25		0.996473
390	75		25		0.996473
509	16	83			0.994512
512		83	16		0.994512
513	83		16		0.994512
609		42		57	1.0
623		57		42	1.0
669		12		87	0.992556
675	87	12			0.992556
676			87	12	0.992556
680		14	85		0.993533
687	50	50			1.0
771		50		50	1.0
855	75		25		0.99649
899	75		25		0.99649
901	66		33		0.997452

SSRs (tot: 1)

Start position	End position	Sequence	Length
846	863	CAAGGC CAAGGC CAAGGC	18

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain