SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
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ECs
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene63737

Length: 398 nt

Origin of reads: Biogeco1 v2 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene63737
CGTCGTGACCGAAACACTCACTCAATATACAAGGAACTTATAACAGGAATGCTTCCCTTCCAGAACATGACAGCGGTGCAGGCAGCTTTTGCTGTTGTCAACAAGGGTGTAAGGCCAATTATCCCCCAGGATTGTCCCCCAGCATTGGCAGAAATCATGTCCCGGTGCTGGGATGCCAATCCTGATGTGAGGCCTTCCTTCAGTGAAGTGGTCAGAATGCTGGAAGAAGCACAGGGCATCAAAAACAGGTGTTTTGGGCTTGCTGTTTTTCACAGGCTAGTTTTGATAGAGGCTTGTTCATATGAATGTCTACAGTGATCTAAAACCAGAGCATAGACCCAGAAAAGGATTATTGGATGTGTGGAGAAAGACATAGGAGCATATCCTCTAATTATATA

Ace file of the UniGene sp_v2.0_unigene63737 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	flag-tagged protein kinase domain of putative mitogen-activated protein kinase kinase kinase [synthetic construct]	-	-	1.0e-23	74%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	98%
Blast2go	protein	-	-	1.08359e-37	89%

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3		IPR015783	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3	Peptidase S10, serine carboxypeptidase, active site	IPR018202	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PTN3

Fln msg: your sequence is shorter than subject: 106 - 420

Fln protein: RRDRNTHSIYKELITGMLPFQNMTAVQAAFAVVNKGVRPIIPQDCPPALAEIMSRCWDANPDVRPSFSEVVRMLEEAQGIKNRCFGLAVFHRLVLIEACSYECLQ*

Protein Length: 107

Fln nts: CGTCGTGACCGAAACACTCACTCAATATACAAGGAACTTATAACAGGAATGCTTCCCTTCCAGAACATGACAGCGGTGCAGGCAGCTTTTGCTGTTGTCAACAAGGGTGTAAGGCCAATTATCCCCCAGGATTGTCCCCCAGCATTGGCAGAAATCATGTCCCGGTGCTGGGATGCCAATCCTGATGTGAGGCCTTCCTTCAGTGAAGTGGTCAGAATGCTGGAAGAAGCACAGGGCATCAAAAACAGGTGTTTTGGGCTTGCTGTTTTTCACAGGCTAGTTTTGATAGAGGCTTGTTCATATGAATGTCTACAGTGA___TCTAAAACCAGAGCATAGACCCAGAAAAGGATTATTGGATGTGTGGAGAAAGACATAGGAGCATATCCTCTAATTATATA

Fln Alignment:

AllPineV4_rep_c79932___ELITGMLPFQNMTAVQAAFAVVNKGVRPIIPQDCPPALAEIMSRCWDANPDVRPSFSEVVRMLEEAQG
C0PTN3_______________ELITGMLPFQNMTAVQAAFAVVNKGVRPAIPQDCPPALAEIMSRCWDANPDVRPSFSEVVRMLEEAQG

SNPs (tot: 13)

Position	A %	C %	G %	T %	Probability
219			83	16	0.994512
222			16	83	0.994512
225	16		83		0.994512
228			16	83	0.994512
231	16	83			0.994512
235	83		16		0.994512
236		83		16	0.994512
238	16		83		0.994512
239		16	83		0.994512
243	83		16		0.994512
336		33		66	0.997452
337		33	66		0.997452
338	33			66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain