SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene63728

Length: 661 nt

Origin of reads: Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene63728

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	multifunctional protein [Oryza sativa]	-	-	2.0e-19	52%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	75%
Blast2go	peroxisomal fatty acid beta-oxidation multifunctional protein	-	-	8.75433e-32	72%

Source	InterPros	Term	Type	Identity
Sma3	Crotonase, core	IPR001753	-	-
Sma3	3-hydroxyacyl-CoA dehydrogenase, C-terminal	IPR006108	-	-
Sma3	3-hydroxyacyl-CoA dehydrogenase, NAD binding	IPR006176	-	-
Sma3	3-hydroxyacyl-CoA dehydrogenase, conserved site	IPR006180	-	-
Sma3	Dehydrogenase, multihelical	IPR013328	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-
Sma3	Enoyl-CoA hydratase/isomerase, conserved site	IPR018376	-	-

Full-Lengther Next Prediction

SNPs (tot: 27)

Position	A %	C %	G %	T %	Probability
202	83	16			0.994516
203	83		16		0.994516
206		83	16		0.994516
209		16		83	0.994516
210		16	83		0.994516
211			83	16	0.994516
219			16	83	0.994523
223	80	20			0.995493
224	80			20	0.995493
352	77	11		11	0.968132
355		22		77	0.999999
356	11		88		0.923569
357	77	11			0.968132
358	77			22	0.999999
359	77	11	11		0.968133
361	88	11			0.923564
363	88			11	0.923564
366			11	88	0.923584
367			11	88	0.923584
369			88	11	0.923564
370		88	11		0.923564
371	88			11	0.923564
375		11	88		0.923564
376	88			11	0.923564
377		11	88		0.923564
378	11			88	0.923564
575	40		60		1.0

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain