SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene63723

Length: 718 nt

Origin of reads: Inia v1 Biogeco1 v2 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene63723

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Ubiquitin-conjugating enzyme 1, E2 n=1 Tax=Selaginella moellendorffii RepID=D8SK34_SELML	-	-	81%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	95%
Blast2go	ubiquitin carrier protein	-	-	78%

Source	ECs	Term	Type	e value	Identity
Blast2go	Ubiquitin--protein ligase.	EC:6.3.2.19	-	0.0	78%

Source	GOs	Term	Type	Identity
Blast2go	ubiquitin-dependent protein catabolic process	GO:0006511	Biological Process	78%
Blast2go	negative regulation of flower development	GO:0009910	Biological Process	78%
Blast2go	histone H2B ubiquitination	GO:0033523	Biological Process	78%
Blast2go	leaf morphogenesis	GO:0009965	Biological Process	78%
Blast2go	vegetative to reproductive phase transition of meristem	GO:0010228	Biological Process	78%
Blast2go	ubiquitin-protein ligase activity	GO:0004842	Molecular Function	78%

Source	InterPros	Term	Type	Identity
Sma3	Ubiquitin-conjugating enzyme, E2	IPR000608	-	-
Sma3	Ubiquitin-conjugating enzyme/RWD-like	IPR016135	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-

Full-Lengther Next Prediction

SNPs (tot: 24)

Position	A %	C %	G %	T %	Probability
21		60		40	1.0
22			40	60	1.0
23		50	50		1.0
24	40		60		1.0
32	88		11		0.923564
35		11	88		0.923564
43	90		10		0.90298
44	90		10		0.90298
123		90		10	0.90298
151	90		10		0.902998
254			87	12	0.992556
258			87	12	0.992555
291		11	88		0.923695
294		11		88	0.923646
299	11			88	0.923646
300		11	88		0.923646
302	87			12	0.992554
303	87			12	0.992554
305			12	87	0.992554
308		87	12		0.992554
609	66			33	0.997464
610			66	33	0.997459
611	66			33	0.997476
613		33		66	0.997476

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain