SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene63664

Length: 1318 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene63664

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ubiquitin family protein [Arabidopsis thaliana] emb\|CAB45783.1\| putative protein [Arabidopsis thaliana] emb\|CAB80909.1\| putative protein [Arabidopsis thaliana] gb\|AAL14410.1\| AT4g01000/F3I3_20 [Arabidopsis thaliana] gb\|AAU90069.1\| At4g01000 [Arabidopsis t	-	-	1.0e-22	30%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	86%
Blast2go	ubiquitin family protein	-	-	0.0	52%

Source	InterPros	Term	Type	Identity
Sma3	Ubiquitin	IPR000626	-	-
Sma3	Zinc finger, C2H2-type matrin	IPR000690	-	-
Sma3	Zinc finger, C2H2-like	IPR015880	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NUY3

Fln msg:

Fln protein: MSGRRLRHVNAEKKLEEWKAEAQERQLEKIAEDYLKKQAKIMKKSDPRSDEGARDVEKYRTEASRAMEAVESAVKDGLQEALKLQQNGKRKKIEDPRLVDAKRAKLWMLEEDEEEDIDEMMGMENQGIILMKDPETGSCSTKSESASDNETASFSNKGNSKTDSCNDDVTMEVPVVSLGANDNGSNELKASIVLEEEEPTFSGDNNGCGKRKTCVELKREDPVSSSSIHGQNITLPKLVDDETTSDANVEKCQLSCSEMAASVTAGCISDTTAVQGEIDSVCDSNGSMGGPLNLDDFNNAEEMEVLGLERLKNELQIRGLKCGGNLTERAARLFLLKTTPLEKLPKKHFAKSKDIGK*

Protein Length: 359

Fln nts: ATGAGCGGAAGGAGGCTCCGCCACGTGAACGCCGAGAAGAAGCTGGAGGAGTGGAAGGCGGAGGCGCAGGAGAGGCAGCTCGAGAAGATTGCGGAGGATTACCTGAAGAAGCAGGCGAAGATTATGAAAAAGAGTGACCCTCGCTCCGATGAGGGCGCCAGGGATGTGGAGAAGTACAGGACCGAAGCTTCCAGGGCCATGGAGGCGGTCGAGTCCGCGGTCAAAGATGGACTGCAGGAGGCCCTCAAGCTTCAACAGAATGGGAAGAGGAAGAAGATCGAAGATCCACGACTTGTCGACGCCAAGCGAGCTAAATTGTGGATGCTTGAAGAAGATGAAGAAGAAGATATTGATGAAATGATGGGTATGGAGAATCAAGGGATTATTTTGATGAAAGATCCAGAAACAGGTAGCTGTTCAACTAAATCAGAATCAGCATCAGATAACGAAACAGCATCATTTTCTAATAAGGGCAATTCCAAAACTGACTCTTGCAATGATGATGTCACGATGGAAGTTCCTGTTGTTTCTTTGGGAGCGAATGACAATGGTAGTAATGAGCTAAAAGCTAGTATTGTGTTGGAAGAAGAGGAACCAACATTCTCTGGTGACAACAATGGTTGTGGTAAGAGGAAGACCTGTGTAGAGTTGAAAAGGGAGGATCCTGTTTCCTCAAGCTCCATTCATGGGCAGAATATAACGCTGCCTAAGTTGGTTGATGATGAAACTACATCTGATGCTAATGTTGAAAAATGTCAGCTTTCATGTTCAGAGATGGCTGCATCGGTCACTGCCGGATGCATTTCTGACACAACTGCTGTACAGGGAGAAATAGACAGTGTTTGCGACAGTAATGGTAGCATGGGAGGACCACTCAACTTGGATGATTTTAACAATGCTGAAGAGATGGAGGTTCTGGGGCTTGAAAGGCTAAAAAATGAATTACAGATTCGTGGTTTAAAATGTGGTGGTAACCTTACTGAGCGTGCTGCAAGATTATTTCTTCTGAAAACAACACCTTTGGAGAAACTCCCCAAGAAGCACTTTGCAAAGTCAAAGGATATAGGGAAGTAA___AATTCAGTGTTTTTACTGATTTGAAATGTATGAGAAGTACTTGTGTACCATTTGTCAAGGAAATTGTTTATGCAGGTTAATACATTGAACATTTAACGATGACAGGATACTATGTGCTTATTTTCGATTGTATATTTGGAAAACATGCCATAAGATGGTTACAACTGTTGTACACTGTTAGATGTATGACTTCTAATCTGAATGTTTTCTTCCTATATATTATCTTCCCAAATTGTGCAACATT

Fln Alignment:

AllPineV4_rep_c79396___MSGRRLRHVNXXXXXXXXXXXXXXRQLEKIAEDYLKKQAKIMKKSDPRSDEGARDVEKYRTEASRAMEAVESAVKDGLQEALKLQQNGKRKKIEDPRLVDAKRAKLWML-XXXXXXXXXXXXXXXNQGIILMKDPETGSCSTKSESASDNETASFSNKGNSKTDSCNDDVTMEVPVVSLGANDNGSNELKASIVLEEEEPTFSGDN-NGCGKRKTCVELKREDPVSSSSIHGQ
A9NUY3_______________MSGRRLRHVNAEKKLEEWKAEAQERQLEKIAEDYLKKQAKIMKKSDPRSDEGARDVEKYRTEASRAMEAVECAVKDGLQEALRLQQNGKRKKIEEPQFVDRKRAKLWMLEEEDEEEEIDEMMGMENQGISSMKDPETGSCSTKAESASDNETTSFFKKGTSETDSCNDDVTMEVPVVSLGENDNDCNEIKATIVLEKEESTFLGDNYNGCGKKDPCVELKKEDPVTSSSIYGQ

SNPs (tot: 13)

Position	A %	C %	G %	T %	Probability
389	11			88	0.923564
390		11	88		0.923564
393			88	11	0.923564
413	12		87		0.992554
447	12	87			0.992554
448		14	85		0.993533
450	85			14	0.993533
451	85			14	0.993533
560			60	20	0.99255
562		25	75		0.996473
563	25	75			0.996473
565	80			20	0.995493
616		66	33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain