SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene63571

Length: 1348 nt

Origin of reads: Inia v1 Biogeco1 v2 Biogeco2 v2 Biogeco3 v1 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene63571 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	protein EXORDIUM like 2 [Arabidopsis thaliana] gb\|AAG41473.1\|AF326891_1 putative phi-1 protein [Arabidopsis thaliana] gb\|AAK00390.1\|AF339708_1 putative phi-1 protein [Arabidopsis thaliana] gb\|AAK55719.1\|AF380638_1 AT5g64260/MSJ1_10 [Arabidopsis thaliana]	-	-	51%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	84%
Blast2go	protein exordium like 2	-	-	66%

Source	GOs	Term	Type	e value	Identity
Blast2go	plant-type cell wall	GO:0009505	Cellular Component	0.0	66%

Source	InterPros	Term	Type	e value	Identity
Sma3	Phosphate-induced protein 1	IPR006766	-	0.0	-

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9P1J7

Fln msg:

Fln protein: MGSVNGMNGWWLFMALLGICSAMSSVRSMAEEVPAMQLIYHNGPLLSSDIDVHVVWYGKFSPVQRSITGDFLHSLGEEEEETLLRNQPSVKEWWKTTDVYREDALFSMSFAVATEKKKNEKIVLVNQTLDESYSLGKWLQRTHIEALVLRASVASNTLVPEKGIFLVLTAQDVVVERFCTSSCGFHSSVKGGKGRRSVSLPYAWVGNSVTQCPGQCAWPFHQPLYGPQTIPLVAPNGDVGVDGMIINIATVLVGTVTNPFNTGFFQGDAALPLEGVSACRGMYGRGAYPGYAGQLLVDETTGASFNARGLNGRMFLLPVMWDPLTKSCKTLV*

Protein Length: 334

Fln nts: CGTCGTGACCTTGGCTGTCACTGGGTAGAGCTCGGGGGTACCTTCAGGCATCCCTCCTGATCAAACTCTGGGCAGGGACTGGACTTCGTGCAGCTGCTCGTCTATTTGTTTAGGATTGGTTTCTGATCGGTTTGGGTAGGAAACGCTACGTTGATAATTCTTGTGCTAGCATTGTCATTAGAATC_-_ATGGGGTCGGTTAATGGCATGAATGGGTGGTGGTTGTTCATGGCTTTGTTGGGAATCTGTTCAGCTATGTCGTCGGTTAGGTCTATGGCAGAGGAGGTGCCGGCAATGCAGTTGATCTACCATAATGGGCCTCTGCTGAGCTCTGATATAGATGTTCATGTGGTTTGGTATGGAAAGTTCAGTCCGGTCCAGAGATCGATTACTGGGGATTTCTTGCACTCCCTGGGAGAGGAAGAAGAAGAGACATTACTGAGGAACCAACCATCTGTAAAGGAATGGTGGAAAACCACTGACGTTTACAGAGAGGATGCATTATTCAGTATGAGCTTTGCTGTAGCGACTGAGAAGAAGAAGAATGAGAAAATAGTGCTGGTGAATCAGACACTGGATGAGTCCTACAGCCTTGGAAAATGGCTACAGAGAACCCACATTGAAGCCCTGGTCCTCAGGGCATCTGTGGCCTCCAATACTTTAGTGCCCGAGAAAGGGATTTTCTTGGTCCTCACTGCCCAAGATGTTGTAGTAGAAAGATTCTGCACGAGCTCATGCGGGTTCCATTCTAGTGTAAAAGGCGGGAAGGGGAGGCGCTCAGTCTCTTTGCCATATGCATGGGTTGGGAACTCTGTAACACAGTGCCCTGGTCAGTGCGCTTGGCCTTTCCACCAGCCTCTCTACGGCCCTCAGACTATACCTCTGGTAGCCCCTAATGGTGATGTGGGCGTGGATGGTATGATCATAAATATCGCCACTGTGCTTGTGGGGACAGTTACAAATCCCTTCAATACTGGGTTTTTTCAAGGTGATGCTGCTCTGCCTCTGGAGGGTGTGTCTGCTTGCAGGGGAATGTATGGAAGAGGGGCATATCCCGGATACGCAGGCCAGCTCTTGGTAGACGAAACGACAGGAGCCAGCTTCAATGCTCGAGGGCTCAATGGCCGCATGTTCCTCCTTCCAGTCATGTGGGATCCTCTTACCAAATCGTGCAAGACCTTGGTTTAA___TTTAAACAGGTTTGTTCTACTTAGTCTAGAACAACAGTTCTCCTGGAGCTTCTGTATGGTACAATTTGTGCTGGGAGCTGTTACAAATCCTTGTAGTTTTTGTAAGTTGGACATTGTACTTAATACAATTGCCTACTATTGAATATGATACAAGGGATTGGGGC

Fln Alignment:

AllPineV4_rep_c78647___MGSVNGMNGWWLFMALLGICSAMSSVRSMAEEVPAMQLIYHNGPLLSSDIDVHVVWYGKFSPVQRSITGDFLHSLGEEEEETLLRNQPSVKEWWKTTDVYREDALFSMSFAVATEKKKNEKIVLVNQTLDESYSLGKWLQRTHIEALVLRASVASNTLVPEKGIFLVLTAQDVVVERFCTSSCGFHSSVKGGKGRRSVSLPYAWVGNSVTQCPGQCAWPFHQPLYGPQTIPLVAPNGDVGVDGMIINIATVLVGTVTNPFNTGFFQGDAALPLEGVSACRGMYGRGAYPGYAGQLLVDETTGASFNARGLNGRMFLLPVMWDPLTKSCKTLV
A9P1J7_______________MGAASGMNGWWLFMAALGFCSGILSSMVMAEEAPAVQLIYHKGSLLSSDIDVHVVWYGKFSPTQRSIIVDFLESLGENEEEALLRNQPSVQEWWKTTGLYGEDASFNMSSAVSSKKKK--KTVLGSQTLDESYSLGKWLQRTHIEALVLRASVASNALLPEKGVFLVLTAQDVVVERFCMSSCGFHSSARSGKGRNSVSLPYAWVGNSVTQCPGQCAWPFHQPLYGPQIPPLVAPNGDVGVDGMIINIATVLVGTVTNPFNTGFFQGDAAAPLEGVSACGGMYGRGAYPGYAGQLLGDETTGASFNARGLNGRMFLLPAMWDPLTKSCKTLV

SNPs (tot: 24)

Position	A %	C %	G %	T %	Probability
1151		20		80	0.995493
1168		80	20		0.995496
1169		80		20	0.995496
1170		80	20		0.995496
1171	20	80			0.995498
1172	80		20		0.995493
1176	20			80	0.995493
1177			20	80	0.995493
1179		20		80	0.995493
1182			20	80	0.995493
1184	80			20	0.995493
1187	80	20			0.995493
1188			20	80	0.995493
1189	20		80		0.995493
1191			20	80	0.995493
1343	66	33			1.0
1344	20	40	40		1.0
1345	16	83			0.994513
1346		83	16		0.994513
1348	66			33	1.0
1349	33		66		0.997452
1353	66	33			0.997452
1355		33	66		0.997452
1357		66		33	0.997452

SSRs (tot: 1)

Start position	End position	Sequence	Length
808	820	TTC TTC TTC TTC T	13

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain