SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene63543

Length: 1107 nt

Origin of reads: Biogeco1 v2 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene63543

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Polyubiquitin 14 n=9 Tax=core eudicotyledons RepID=UBQ14_ARATH	-	-	0.0	85%
FL-Next	tr=Polyubiquitin; Pinus sylvestris (Scots pine).	-	-	0.0	85%

Source	InterPros	Term	Type	e value	Identity
Sma3	Ubiquitin	IPR000626	-	0.0	-
Sma3	Ribosomal protein S27a	IPR002906	-	0.0	-

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: Q41067

Fln msg: warning!, putative chimeric sequence! or repetitive structure Unexpected STOP codon at 3' end. Distance to subject end: 259 aas, atg_distance in limit (1-15): atg_distance = 1, W2: There is no M at the beginning, your sequence is shorter than subject: 325 - 761

Fln protein: VVTLAVTQCFTVLAHFRNAITVLSSV*FPSGFVLC*FHLKMQIFVTLTGKIITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIERVPTHDRVLRFRAGMQIFVKTWYGKTITLEVENYDTIDNVKAKIQDKEGIPPDQQRLIFANNQLExxxxxxRDLGCHSTLYLVLRMQIFVKVPTGKTITLEVESSDTIANVQAKIQDKEVIPPERQRLIFAGKQLENGRTLANYNIQKxxxxxxxxxxITLLFDNSEMIDNVKAKIQDKEGIPSDEQRLIFAGKQLGDGRTLADYNIQKESPLHLVLRLCGGC*

Protein Length: 326

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGTGTTTTACAGTTTTGGCTCATTTTCGGAACGCGATCACGGTGCTCTCTTCCGTTTGATTTCCTTCAGGTTTTGTATTGTGTTGATTTCATTTAAAG_-_ATGCAGATATTTGTGACCTTGACCGGTAAGATCATAACTCTTGAGGTGGAGAGCTCTGATACCATTGACAATGTAAAGGCCAAGATTCAGGACAAAGAGGGAATTCCACCAGACCAGCAGCGTCTCATCTTTGCCGGTAAGCAGTTGGAAGATGGACGCACTCTCGCTGACTACAATATCGAGAGGGTTCCCACTCATGACCGTGTCCTCCGTTTTAGAGCTGGGATGCAGATCTTTGTCAAGACCTGGTACGGTAAGACTATTACCCTGGAAGTTGAGAATTATGATACTATTGACAATGTCAAGGCCAAGATCCAAGACAAGGAGGGGATTCCACCGGACCAGCAGAGGTTGATCTTTGCTAATAATCAACTTGAGxxxxxxxxxxxxxxxxxxCGTGACCTTGGCTGTCACTCGACTCTTTACCTTGTCCTGCGGATGCAAATCTTTGTGAAAGTCCCGACCGGCAAGACCATCACGCTGGAAGTTGAGAGCTCCGACACTATTGCTAATGTGCAAGCCAAGATTCAAGACAAGGAAGTCATTCCCCCGGAGCGGCAGAGATTGATCTTTGCCGGGAAGCAACTTGAAAATGGGAGGACTCTAGCGAATTACAACATTCAGAAGGxxxxxxxxxxxxxxxxxxxxxxxxxxxCTATCACACTGTTGTTTGACAACTCGGAAATGATTGATAACGTAAAAGCGAAAATTCAGGACAAGGAAGGGATTCCGTCTGATGAGCAGAGGCTCATATTTGCTGGTAAACAGCTGGGGGATGGGCGAACTCTAGCCGATTATAACATCCAGAAGGAGTCTCCACTTCACCTTGTCTTGCGTCTGTGTGGTGGGTGTTGAAAATCTCGACATATCTTTTCATGAATAGGGTCTAAACGGGCATTTCATTGAATTCTTAGCTAGTTGGCAATTATATATCCTGTCAAATATGTTCTTACTAGGTTGTCTATGCATTATGTGGCACTCTTATGAA

Fln Alignment:

AllPineV4_rep_c78412___xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxITLLFDNSEMIDNVKAKIQDKEGIPSDEQRLIFAGKQLGDGRTLADYNIQKESPLHLVLRLCGG
Q41067_______________xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
432	75			25	0.996473
433			75	25	0.996473
434	75	25			0.996473
435			25	75	0.996473
939			60	40	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain