SustainPineDB

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Assembly info
Unigenes
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ECs
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene63531

Length: 507 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Uagpf v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene63531
CGTCGTGACCTTGGCTGTCACTCATTCTTCGATCGTCTTCGCTTGTGTGCATTGTTGTGTGTTGAAGTCGTCACGTTCCTGCAATTCTCTGAGATTTTCTTGTGATCAGAGCCATGGCCTCCACAGCTGCCGAGAATGCACCTGAGGAAGTAGTTGCTGTTACCACCGAGGAAGTTGTTACAGCAGCTCCTGAAACAAAGGCCGAGGAGCCCAAGGCCGCCAAGAAGGCGAAGGCTCCCAAGGAAAAGAAGCCCAAGGCTCCCAAGGGATCCAAGCCTGCCCCGGCACATCCTCCATACTTCCAGATGATCAAAGAGGCGATCTCTGCCTTGAAGGAGAAGGGAGGTTCAAGTCCCAGGGCTATCGCTAAATACATGGAGGAGAAGCACAAGTCAGTTCTGCCCCCTTCGCTACAAGAAGATGCTCGCTGTACAGATAAGAAGCTCGCAGTGACTGACAACCAAGGTACGAAGGTGAAAGCTTCTTTCAAGCTGGCCGAGGAGCCAA

Ace file of the UniGene sp_v2.0_unigene63531 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Histone H1-like protein (Fragment) n=15 Tax=Picea sitchensis RepID=E0ZG68_PICSI	-	-	2.0e-17	75%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	75%
Blast2go	histone h1-like protein	-	-	1.03978e-20	80%

Source	InterPros	Term	Type	Identity
Sma3	Histone H1/H5	IPR005818	-	-
Sma3	Histone H5	IPR005819	-	-
Sma3	Winged helix-turn-helix transcription repressor DNA-binding	IPR011991	-	-
Sma3	AT hook, DNA-binding motif	IPR017956	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NK58

Fln msg: Distance to subject end: 118 aas, your sequence is shorter than subject: 131 - 248

Fln protein: MASTAAENAPEEVVAVTTEEVVTAAPETKAEEPKAAKKAKAPKEKKPKAPKGSKPAPAHPPYFQMIKEAISALKEKGGSSPRAIAKYMEEKHKSVLPPSLQEDARCTDKKLAVTDNQGTKVKASFKLAEEP

Protein Length: 132

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTCTTCGATCGTCTTCGCTTGTGTGCATTGTTGTGTGTTGAAGTCGTCACGTTCCTGCAATTCTCTGAGATTTTCTTGTGATCAGAGCC_-_ATGGCCTCCACAGCTGCCGAGAATGCACCTGAGGAAGTAGTTGCTGTTACCACCGAGGAAGTTGTTACAGCAGCTCCTGAAACAAAGGCCGAGGAGCCCAAGGCCGCCAAGAAGGCGAAGGCTCCCAAGGAAAAGAAGCCCAAGGCTCCCAAGGGATCCAAGCCTGCCCCGGCACATCCTCCATACTTCCAGATGATCAAAGAGGCGATCTCTGCCTTGAAGGAGAAGGGAGGTTCAAGTCCCAGGGCTATCGCTAAATACATGGAGGAGAAGCACAAGTCAGTTCTGCCCCCTTCGCTACAAGAAGATGCTCGCTGTACAGATAAGAAGCTCGCAGTGACTGACAACCAAGGTACGAAGGTGAAAGCTTCTTTCAAGCTGGCCGAGGAGCCAA

Fln Alignment:

AllPineV4_rep_c78333___YFQMIKEAISALKEKGGSSPRAIAKYMEEKHKSVLPPSLQEDARCTDKKLAVTDNQGTKVKASFKLAE
A9NK58_______________YFQMIKEAISALKEKGGSSPRAIAKYMEEKHKAVLPPNYKKMLAVQIKKL-VLAGKLTKVKASFKLAE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain