SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene63474

Length: 450 nt

UniGene Fasta

>sp_v2.0_unigene63474
TGCAATTGGCAGGTGTGAAACCAGATTCATATACTATCTCTAGCATTATCCCTGCTTGTGTATGCTTGACGGCTCTACGACAGGGGAAAGAGATCCACAATTATATGATCAGAACTGGGCTTGATGCCAATGTTCTCGCAGTGAATTCCGTAATTGACATGTATGCCAAATGTGGAAGTATATTGACAGCACGGCAAGTATTTGACAAATTATCTTGGAGAGATGCGATTTCATGGAATACAATGATTGCAGGTTATGGTTTACATGGGTGTGGCCAGGATGCCATCTTGCTCTTTTCTAAAATGCACCAAGCAGGCTTGAAACCTGACAGTATTACCTTTATTGGAATTTTGTCTGCATGCAGCCGTGCAGGGCTGGTGAATGAAGGTTGGCAATACTTCGAGCAGATGATGGATTGCTATCAAATTATGCCTAGTGTTGAGCACTGTG

Ace file of the UniGene sp_v2.0_unigene63474

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	pentatricopeptide repeat-containing protein [Arabidopsis thaliana] sp\|Q9SN39.1\|PP320_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g18750, chloroplastic; Flags: Precursor emb\|CAB37460.1\| putative protein [Arabidopsis thaliana] emb\|CAB	-	-	1.0e-37	47%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	50%
Blast2go	pentatricopeptide repeat-containing protein at3g23330-like	-	-	0.0	70%

Source	InterPros	Term	Type	Identity
Sma3	Regulator of chromosome condensation, RCC1	IPR000408	-	-
Sma3	Beta-lactamase, class-A/D	IPR000871	-	-
Sma3	Adenosine/AMP deaminase domain	IPR001365	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	Immunoglobulin/major histocompatibility complex, conserved site	IPR003006	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	Thioredoxin, conserved site	IPR017937	-	-
Sma3	Asp/Glu racemase, active site	IPR018187	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LQA8

Fln msg: Distance to subject end: 232 aas, your sequence is shorter than subject: 149 - 795

Fln protein: QLAGVKPDSYTISSIIPACVCLTALRQGKEIHNYMIRTGLDANVLAVNSVIDMYAKCGSILTARQVFDKLSWRDAISWNTMIAGYGLHGCGQDAILLFSKMHQAGLKPDSITFIGILSACSRAGLVNEGWQYFEQMMDCYQIMPSVEHC

Protein Length: 150

Fln nts: TGCAATTGGCAGGTGTGAAACCAGATTCATATACTATCTCTAGCATTATCCCTGCTTGTGTATGCTTGACGGCTCTACGACAGGGGAAAGAGATCCACAATTATATGATCAGAACTGGGCTTGATGCCAATGTTCTCGCAGTGAATTCCGTAATTGACATGTATGCCAAATGTGGAAGTATATTGACAGCACGGCAAGTATTTGACAAATTATCTTGGAGAGATGCGATTTCATGGAATACAATGATTGCAGGTTATGGTTTACATGGGTGTGGCCAGGATGCCATCTTGCTCTTTTCTAAAATGCACCAAGCAGGCTTGAAACCTGACAGTATTACCTTTATTGGAATTTTGTCTGCATGCAGCCGTGCAGGGCTGGTGAATGAAGGTTGGCAATACTTCGAGCAGATGATGGATTGCTATCAAATTATGCCTAGTGTTGAGCACTGTG

Fln Alignment:

AllPineV4_rep_c78109___QLAGVKPDSYTISSIIPACVCLTALRQGKEIHNYMIRTGLDANVLAVNSVIDMYAKCGSILTARQVFDKLSWRDAISWNTMIAGYGLHGCGQDAILLFSKMHQAGLKPDSITFIGILSACSRAGLVNEGWQYFEQMMDCYQIMPSVEH
B8LQA8_______________QAQGIKPDSFAIVSVLPACAHFLALEQGKQIHGYTIRSGFESNVVVGTGLVDIYAKCGNVNTAQKLFERMPEQDVVSWTTMILAYGIHGHGEDALALFSKMQETGTKLDHIAFTAILTACSHAGLVDQGLQYFQCMKSDYGLAPKLEH

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain