SustainPineDB

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Assembly info
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene63465

Length: 349 nt

UniGene Fasta

>sp_v2.0_unigene63465
ATTTGCCAAAGGATCTGACCTATATTGTTTGCATAAGGCACCATCTGTCTTCTCAATAATAATGCATTTCCTTCGTTTGCATTGCACAACAGATCCGACCACTATGGAGACATTACTTTCAGAATACCCAGGGTCTTATATTTGTAGTTGATAGTAATGACAGGGACCGTGTTGTTGAAGCAAGAGACGAATTGCATGGGATGCTGAATGAGGTAAGCTCTTGCTGTGTTAGTTTGAAGATATGCGTGTGTGAGAATAACCATTTTTAGAGATGGTTCAACTGTTGCATTATATTTTATATATTAAATTATTCTAAACTTAGCTTGATGTGAATTTTATTGTAACTCAG

Ace file of the UniGene sp_v2.0_unigene63465

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ADP-ribosylation factor (Fragment) n=1 Tax=Gossypium barbadense RepID=Q6XD33_GOSBA	-	-	5.0e-16	80%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	95%
Blast2go	adp-ribosylation factor	-	-	1.62148e-20	96%

Source	InterPros	Term	Type	Identity
Sma3	PAS	IPR000014	-	-
Sma3	Calcium-binding EF-hand	IPR002048	-	-
Sma3	Small GTP-binding protein domain	IPR005225	-	-
Sma3		IPR006688	-	-
Sma3	Small GTPase superfamily, ARF/SAR type	IPR006689	-	-
Sma3	EF-hand-like domain	IPR011992	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-
Sma3	EF-hand	IPR018248	-	-
Sma3	EF-HAND 2	IPR018249	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PPL2

Fln msg: Unexpected stop codon in the beginning of your sequence, Unexpected STOP codon at 3' end. Distance to subject end: 22 aas, your sequence is shorter than subject: 89 - 181

Fln protein: LPKDLTYIVCIRHHLSSQ**CISFVCIAQQIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHGMLNEVSSCCVSLKICVCENNHF*

Protein Length: 90

Fln nts: ATTTGCCAAAGGATCTGACCTATATTGTTTGCATAAGGCACCATCTGTCTTCTCAATAATAATGCATTTCCTTCGTTTGCATTGCACAACAGATCCGACCACTATGGAGACATTACTTTCAGAATACCCAGGGTCTTATATTTGTAGTTGATAGTAATGACAGGGACCGTGTTGTTGAAGCAAGAGACGAATTGCATGGGATGCTGAATGAGGTAAGCTCTTGCTGTGTTAGTTTGAAGATATGCGTGTGTGAGAATAACCATTTTTAGAGATGGTTCAACTGTTGCATTATATTTTATATATTAAATTATTCTAAACTTAGCTTGATGTGAATTTTATTGTAACTCAG

Fln Alignment:

AllPineV4_rep_c78089___QIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHGMLNE
C0PPL2_______________KIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain