SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene63438

Length: 280 nt

Origin of reads: Biogeco1 v2

UniGene Fasta

>sp_v2.0_unigene63438
TACTATTTGGGCCGGTGGCTGTAATGCCATCTGCTAAAGGGCAGTTTCCAGATACCCATCCTCATTTCATAGGGACTTACTGGGGTGCAATAAGTACTTCGTTCTGTTCTGAAACAGTGGAGTCCGCAGATGCATATTTATTTGTAGGGACTATTTTCAATGACTATGACTATAGTTCAGTGGGATATTCATTGCTATTGAAAAAGAAAGCTATAATTGTGCAACCTCACAGAGTGACTGTGGGGAATGGGCCTACATTTGGGTGTGTTTTGATGAAAGA

Ace file of the UniGene sp_v2.0_unigene63438

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Pyruvate decarboxylase 1 (Fragment) n=1 Tax=Petunia x hybrida RepID=Q5BN14_PETHY	-	-	3.0e-34	82%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	85%
Blast2go	pyruvate decarboxylase	-	-	4.2039e-45	86%

Source	GOs	Term	Type	e value	Identity
Blast2go	response to hypoxia	GO:0001666	Biological Process	4.2039e-45	86%
Blast2go	catalytic activity	GO:0003824	Molecular Function	4.2039e-45	86%

Source	InterPros	Term	Type	Identity
Sma3	TPP-binding enzyme, conserved site	IPR000399	-	-
Sma3	Thiamine pyrophosphate enzyme, C-terminal TPP-binding	IPR011766	-	-
Sma3	Thiamine pyrophosphate enzyme, central domain	IPR012000	-	-
Sma3	Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain	IPR012001	-	-
Sma3	Pyruvate decarboxylase/indolepyruvate decarboxylase	IPR012110	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PRN0

Fln msg: Distance to subject end: 236 aas, your sequence is shorter than subject: 92 - 409

Fln protein: LFGPVAVMPSAKGQFPDTHPHFIGTYWGAISTSFCSETVESADAYLFVGTIFNDYDYSSVGYSLLLKKKAIIVQPHRVTVGNGPTFGCVLMK

Protein Length: 93

Fln nts: TACTATTTGGGCCGGTGGCTGTAATGCCATCTGCTAAAGGGCAGTTTCCAGATACCCATCCTCATTTCATAGGGACTTACTGGGGTGCAATAAGTACTTCGTTCTGTTCTGAAACAGTGGAGTCCGCAGATGCATATTTATTTGTAGGGACTATTTTCAATGACTATGACTATAGTTCAGTGGGATATTCATTGCTATTGAAAAAGAAAGCTATAATTGTGCAACCTCACAGAGTGACTGTGGGGAATGGGCCTACATTTGGGTGTGTTTTGATGAAAGA

Fln Alignment:

AllPineV4_rep_c78036___PVAVMPSAKGQFPDTHPHFIGTYWGAISTSFCSETVESADAYLFVGTIFNDYDYSSVGYSLLLKK-KAIIVQPHRVTVGNGPTFGCVLMK
C0PRN0_______________PVAVMPSAKGQVPEIHPHFIGTYWGAISTSFCAEIVESADAYLFAGPIFN--DYSSVGYSLLLKKEKAVIVQPNRVTIGNGPTFGCVLMK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain