SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene63396

Length: 475 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene63396
AACTTGTTTACCTATGCAAGTATTATTCCTGCTTGCGCCAACATGGCTGCTCTGGAACAGGGCATGGAGATCCATGAGGAAATAAGTAGATGTGGACTGCAGTCAGATGTCGTAGTGGAGAGTGCCCTTATAGATATGTATGCAAAATGTGGTTGTATAGAGAAGGCACGGGATATGTTCGACAAAATGCCGCAGCGGAATGCTTTCTCATGGACTGCACTGATTGCAGGTTATGCCATGCATGGATCTGCAAATGAGGCCCTCCAACTCTTTCAACAGATGCATCAGTCTGGTGTGACTCCAACCCATGTAACCTTAATCTGTGTTTTGTCTGCATGCTGCCACGCAGGACTAGTGGAGAAGGGCAAGAAATACTTCCATTCTATAACCGAAGATTATCACATCACTCCTGTAATGGAGCACTATGGCTGCATGGTTGACCTTCTTGGCCGTGCTGGGCATTTGGATGAGGCCC

Ace file of the UniGene sp_v2.0_unigene63396 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Putative pentatricopeptide (PPR) repeat-containing protein n=1 Tax=Oryza sativa Japonica Group RepID=Q8S263_ORYSJ	-	-	8.40779e-45	55%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	59%
Blast2go	pentatricopeptide repeat-containing protein	-	-	0.0	72%

Source	InterPros	Term	Type	Identity
Sma3	Oligopeptide transporter	IPR000109	-	-
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	Beta-lactamase, class-A/D	IPR000871	-	-
Sma3	Tobamoviral movement protein	IPR001022	-	-
Sma3	Legume lectin domain	IPR001220	-	-
Sma3	Adenosine/AMP deaminase domain	IPR001365	-	-
Sma3	F-box domain, cyclin-like	IPR001810	-	-
Sma3	DNA methylase, N-6 adenine-specific, conserved site	IPR002052	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	Immunoglobulin/major histocompatibility complex, conserved site	IPR003006	-	-
Sma3	Putative methylase	IPR004557	-	-
Sma3	Aspartate/ornithine carbamoyltransferase	IPR006130	-	-
Sma3	Domain of unknown function DUF659	IPR007021	-	-
Sma3	Methyltransferase small	IPR007848	-	-
Sma3		IPR011523	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	EGF-like region, conserved site	IPR013032	-	-
Sma3	Thioredoxin, conserved site	IPR017937	-	-
Sma3	Asp/Glu racemase, active site	IPR018187	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5AB53

Fln msg: Distance to subject end: 46 aas, your sequence is shorter than subject: 158 - 232

Fln protein: NLFTYASIIPACANMAALEQGMEIHEEISRCGLQSDVVVESALIDMYAKCGCIEKARDMFDKMPQRNAFSWTALIAGYAMHGSANEALQLFQQMHQSGVTPTHVTLICVLSACCHAGLVEKGKKYFHSITEDYHITPVMEHYGCMVDLLGRAGHLDEA

Protein Length: 159

Fln nts: AACTTGTTTACCTATGCAAGTATTATTCCTGCTTGCGCCAACATGGCTGCTCTGGAACAGGGCATGGAGATCCATGAGGAAATAAGTAGATGTGGACTGCAGTCAGATGTCGTAGTGGAGAGTGCCCTTATAGATATGTATGCAAAATGTGGTTGTATAGAGAAGGCACGGGATATGTTCGACAAAATGCCGCAGCGGAATGCTTTCTCATGGACTGCACTGATTGCAGGTTATGCCATGCATGGATCTGCAAATGAGGCCCTCCAACTCTTTCAACAGATGCATCAGTCTGGTGTGACTCCAACCCATGTAACCTTAATCTGTGTTTTGTCTGCATGCTGCCACGCAGGACTAGTGGAGAAGGGCAAGAAATACTTCCATTCTATAACCGAAGATTATCACATCACTCCTGTAATGGAGCACTATGGCTGCATGGTTGACCTTCTTGGCCGTGCTGGGCATTTGGATGAGGCCC

Fln Alignment:

AllPineV4_rep_c77938___NLFTYASIIPACANMAALEQGMEIHEEISRCGLQSDVVVESALIDMYAKCGCIEKARDMFDKMPQRNAFSWTALIAGYAMHGSANEALQLFQQMHQSGVTPTHVTLICVLSACCHAGLVEKGKKYFHSITEDYHITPVMEHYGCMVDLLGRAGHLDEA
D5AB53_______________NAETFPSVLPACANLAALEPGKVLHLYIIKSGFESDVFVGSTLIDMYAKCSSIGDASKVFDGMSTRNVVSWNAMIAAYAIHGCGKQALDLFEQMKHSDTSPNQVTFVGVLSACCHAGLVSEGRQYFNSMSVDYHITPVMEHYCCMVDLLGRTGCLDEA

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain