SustainPineDB

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Assembly info
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene63395

Length: 487 nt

UniGene Fasta

>sp_v2.0_unigene63395
GATGATCCTTTGGGAAAAACTTTTCCAATAATGCTGCCTTTCCTCTTCCTAGTGGAATGGGTCAAAGTGTGCCAATCACAGAGTACAAAGCAAATCTTCGACAAATATGTGCACATATCAAGGGTCTTTTAGATACATCTCGTGTGGTTCTTGTAACTCCTTCACCTGTGTTTGATGAAGCACGCCGAGCTTATGCCAGACGCAAGTGGGGTAGCCTTGCTGGTAATTACCCAGATCGTACAAATCAACGTGCGCAGGAGTATGCTGAAGCCTGTATAGAAGTGGCAAAGGAGATGGATGTCGGCGTGGTAGATCTCTGGAATGCTATTCAAAGAACAAAGGACTGGGAGACAGAATGTCTGAGTGTTTGCAGGTACTTCAGTCCTTGGCTTCCAAGTTCACAAACTTGGGCAAGAATTATTGTTGCTTGGATCCCAAATGTTTGTATGGTGGATTAAATCGTTTCTAAGGCTATAGTATACATTGG

Ace file of the UniGene sp_v2.0_unigene63395

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Lipase_GDSL domain containing protein	-	-	2.0e-09	18%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	36%
Blast2go	protein	-	-	4.00771e-43	63%

Source	InterPros	Term	Type	e value	Identity
Sma3	Lipase, GDSL	IPR001087	-	0.0	-
Sma3	Esterase, SGNH hydrolase-type, subgroup	IPR013831	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LNG4

Fln msg: Unexpected stop codon in the beginning of your sequence, Unexpected STOP codon at 3' end. Distance to subject end: 29 aas, your sequence is shorter than subject: 152 - 256

Fln protein: *SFGKNFSNNAAFPLPSGMGQSVPITEYKANLRQICAHIKGLLDTSRVVLVTPSPVFDEARRAYARRKWGSLAGNYPDRTNQRAQEYAEACIEVAKEMDVGVVDLWNAIQRTKDWETECLSVCRYFSPWLPSSQTWARIIVAWIPNVCMVD*

Protein Length: 153

Fln nts: GATGATCCTTTGGGAAAAACTTTTCCAATAATGCTGCCTTTCCTCTTCCTAGTGGAATGGGTCAAAGTGTGCCAATCACAGAGTACAAAGCAAATCTTCGACAAATATGTGCACATATCAAGGGTCTTTTAGATACATCTCGTGTGGTTCTTGTAACTCCTTCACCTGTGTTTGATGAAGCACGCCGAGCTTATGCCAGACGCAAGTGGGGTAGCCTTGCTGGTAATTACCCAGATCGTACAAATCAACGTGCGCAGGAGTATGCTGAAGCCTGTATAGAAGTGGCAAAGGAGATGGATGTCGGCGTGGTAGATCTCTGGAATGCTATTCAAAGAACAAAGGACTGGGAGACAGAATGTCTGAGTGTTTGCAGGTACTTCAGTCCTTGGCTTCCAAGTTCACAAACTTGGGCAAGAATTATTGTTGCTTGGATCCCAAATGTTTGTATGGTGGATTAAATCGTTTCTAAGGCTATAGTATACATTGG

Fln Alignment:

AllPineV4_rep_c77937___NNAAFPLPSGMGQSVPITEYKANLRQICAHIKGLLDTSRVVLVTPSPVFDEARRAYARRKWGSLAGNYPDRTNQRAQEYAEACIEVAKEMDVGVVDLWNAIQRTKDWETECLSVCRYFS
B8LNG4_______________NDSVGPHTSGLGPHVPLSEYIDNMRKIATYLKELSESTRLIFLSCPPINEDMLNNDSSSILSPIV-----RTNEASRHYSEACIEVCKDMDLKVVDLWSAIQTRPDWRTSCFTDGIHFS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain