SustainPineDB

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Assembly info
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene63384

Length: 398 nt

UniGene Fasta

>sp_v2.0_unigene63384
CGTCGTGACCTTGGCTGTCACTCAGGTGCTTCTCCTTGCTCTGTTGATGGTGGCCAATTGATAGGTTCTCCATCACTCACACCAATTACAATGGTTGCAAAGTTGATGGATAGCTACCTTGCAGAGGTTGCACCAGATGTCAATTTGAAGCTTCCGAAATTTCAGTCATTAGCAGCAGCTCTTCCTGATTATGCTAGACCTTTGGACGATGGTCTATACCGTGCTATTGATATATACTTAAAGGTATCCTTGTTTCCTGTTCTTTTTGGGTTTAATCAAATCCATTGCCAATCTGTGGAAATTTCACTCAAGGTGACCTTAGTTAGAAGAAGGGTTCCATAATTCCCAATTGCCTTCTACTCTATGGCAGAGGATATTATCACGGAAGGTATTAGATC

Ace file of the UniGene sp_v2.0_unigene63384

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Root phototropism protein, putative n=1 Tax=Ricinus communis RepID=B9SKU3_RICCO	-	-	9.0e-32	93%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	70%
Blast2go	btb poz domain-containing protein at1g30440-like	-	-	8.08468e-37	91%

Source	InterPros	Term	Type	Identity
Sma3	BTB/POZ-like	IPR000210	-	-
Sma3	Nitrogenase component 1, conserved site	IPR000318	-	-
Sma3	Zinc finger, CCCH-type	IPR000571	-	-
Sma3	SANT/Myb domain	IPR001005	-	-
Sma3	NPH3	IPR004249	-	-
Sma3	Histone H1/H5	IPR005818	-	-
Sma3	BTB/POZ fold	IPR011333	-	-
Sma3	Winged helix-turn-helix transcription repressor DNA-binding	IPR011991	-	-
Sma3		IPR012287	-	-
Sma3	BTB/POZ	IPR013069	-	-
Sma3		IPR013089	-	-
Sma3		IPR014778	-	-
Sma3	Aldehyde dehydrogenase, conserved site	IPR016160	-	-
Sma3	Myb domain, DNA-binding	IPR017930	-	-
Sma3	Superoxide dismutase, copper/zinc, binding site	IPR018152	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-
Sma3	Peroxidases heam-ligand binding site	IPR019793	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LPD8

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 143 aas, your sequence is shorter than subject: 114 - 648

Fln protein: RRDLGCHSGASPCSVDGGQLIGSPSLTPITMVAKLMDSYLAEVAPDVNLKLPKFQSLAAALPDYARPLDDGLYRAIDIYLKVSLFPVLFGFNQIHCQSVEISLKVTLVRRRVP*

Protein Length: 115

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGGTGCTTCTCCTTGCTCTGTTGATGGTGGCCAATTGATAGGTTCTCCATCACTCACACCAATTACAATGGTTGCAAAGTTGATGGATAGCTACCTTGCAGAGGTTGCACCAGATGTCAATTTGAAGCTTCCGAAATTTCAGTCATTAGCAGCAGCTCTTCCTGATTATGCTAGACCTTTGGACGATGGTCTATACCGTGCTATTGATATATACTTAAAGGTATCCTTGTTTCCTGTTCTTTTTGGGTTTAATCAAATCCATTGCCAATCTGTGGAAATTTCACTCAAGGTGACCTTAGTTAGAAGAAGGGTTCCATAATTCCCAATTGCCTTCTACTCTATGGCAGAGGATATTATCACGGAAGGTATTAGATC

Fln Alignment:

AllPineV4_c77904___SPCSVDGGQLIGSPSLTPITMVAKLMDSYLAEVAPDVNLKLPKFQSLAAALPDYARPLDDGLYRAIDIYLK
B8LPD8_______________NPHGFEEGGFMGSPSMTPIMMVGKLVDGYLAEVAPDGNLKPAKFHSLADALPDYARLFDDGLYRAIDIYLK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain