SustainPineDB

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Assembly info
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene63346

Length: 563 nt

Origin of reads: Biogeco1 v2 Uagpf v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene63346
ATGGGGATGACTGAATGCTGCGCTTCCTTGTACTGCTACTTCTCTCCAGGTCTTCGTCGTGAACTCGGCAATCACTCAGGTTCCTGCAAATTTGGCGTTAATTGGGCGAAATAACATGGGGTAGCTACAGAAATAGATACAAAATCTTATTGACCTCTTAATCCGACCCTCGTATTTGTATCGAACCAGGCTGGCCTCAATTTTCTGGTGGAAGTGCTAAATCCAGCGTGCTAGATCTATTGGTGCCACCAATGATATGACGATAATGTCTTGCGGCTAATCTGGGATTAATGCACAGAAGAGGATGTGAAGTCTCATCACATTAGCCGATGAATCCAGGGTCTTCTGCTCAGCTATTTTATCTGAGCTGAACTTAAAACAAACGTTTCCTTGAGGCTAAGAGATATACAAGGAAAAAGACTTGGAGATTAACATGGGCCAGCTTTACCTGGTAAAGTTAGATGGAAGGTCTTACAGCTGCAAGTATTGTGGCAGCCATTTGGCACTGTTTAAGGAACTTATGTCCAAGTCATTCACTGCGGAAATGGGAAGGCCTATCTTTT

Ace file of the UniGene sp_v2.0_unigene63346 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Protein yippee-like dbj\|BAC23053.1\| yippee-like protein [Solanum tuberosum] gb\|ABX72226.1\| yippee-like protein [Solanum tuberosum]	-	-	1.0e-05	50%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	70%
Blast2go	fad nad binding	-	-	9.91801e-10	81%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5A8B9

Fln msg: Distance to subject end: 84 aas, your sequence is shorter than subject: 43 - 127

Fln protein: MGQLYLVKLDGRSYSCKYCGSHLALFKELMSKSFTAEMGRPIF

Protein Length: 44

Fln nts: ATGGGGATGACTGAATGCTGCGCTTCCTTGTACTGCTACTTCTCTCCAGGTCTTCGTCGTGAACTCGGCAATCACTCAGGTTCCTGCAAATTTGGCGTTAATTGGGCGAAATAACATGGGGTAGCTACAGAAATAGATACAAAATCTTATTGACCTCTTAATCCGACCCTCGTATTTGTATCGAACCAGGCTGGCCTCAATTTTCTGGTGGAAGTGCTAAATCCAGCGTGCTAGATCTATTGGTGCCACCAATGATATGACGATAATGTCTTGCGGCTAATCTGGGATTAATGCACAGAAGAGGATGTGAAGTCTCATCACATTAGCCGATGAATCCAGGGTCTTCTGCTCAGCTATTTTATCTGAGCTGAACTTAAAACAAACGTTTCCTTGAGGCTAAGAGATATACAAGGAAAAAGACTTGGAGATTAAC_-_ATGGGCCAGCTTTACCTGGTAAAGTTAGATGGAAGGTCTTACAGCTGCAAGTATTGTGGCAGCCATTTGGCACTGTTTAAGGAACTTATGTCCAAGTCATTCACTGCGGAAATGGGAAGGCCTATCTTTT

Fln Alignment:

AllPineV4_rep_c77825___MGQLYLVKLDGRSYSCKYCGSHLALFKELMSKSFTAEMGR
D5A8B9_______________MGRLYLVKLDGRTYSCRICDSHLALFGELISKSFHCGKGK

SNPs (tot: 7)

Position	A %	C %	G %	T %	Probability
119	66		33		0.997452
120	66	33			0.997452
122	33	66			0.997452
123	33			66	0.997452
124	33		66		0.997452
218		33	66		0.997452
317		33		66	0.997458

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain