SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene63338

Length: 413 nt

UniGene Fasta

>sp_v2.0_unigene63338
TATTTGATCCGATGTGGGATTGCATCAAGGAAATGAAGAAAAAGGGGGTCGTGTCCTTGGTGTCATTCTCCTATATGTTTTGGAATTATGTGCATGACGGTAAGGTTGAGGAGGCAAGGATGACATTTGAGGTGATGGAGCAATATGGATTCCGATAGGATGTTGTTGCACTAAATTGTCTTCTCAGTGCGTTGTGCAGGAAAAAATAGGTGAAAGTGATGGTGGAATTCCTAGATAGAATGAAGGTGAGGATCACCCCAGATGTTGACACGTATGCATTGCTACTGGAGAGATGTGATATCGTACATGATGTGACTAATGCTAGAATCACCTTTGGAGAAATGGTTAGCCGCATCGGATGGCTGTTGAACAACATATCGGCTTATAATGCATTCTTGAGCATTCTGGTCAAT

Ace file of the UniGene sp_v2.0_unigene63338

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	pentatricopeptide repeat-containing protein [Arabidopsis thaliana] sp\|Q9LN22.1\|PPR54_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g20300, mitochondrial; Flags: Precursor gb\|AAF88159.1\|AC026234_10 Contains similarity to a hypothetical	-	-	4.0e-08	30%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	67%
Blast2go	pentatricopeptide repeat-containing protein mitochondrial-like	-	-	0.0	67%

Source	InterPros	Term	Type	Identity
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	Immunoglobulin/major histocompatibility complex, conserved site	IPR003006	-	-
Sma3	Pectinesterase inhibitor	IPR006501	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NUW1

Fln msg: Distance to subject end: 240 aas, your sequence is shorter than subject: 137 - 504

Fln protein: FDPMWDCIKEMKKKGVVSLVSFSYMFWNYVHDGKVEEARMTFEVMEQYGFR*DVVALNCLLSALCRKK*VKVMVEFLDRMKVRITPDVDTYALLLERCDIVHDVTNARITFGEMVSRIGWLLNNISAYNAFLSILVN

Protein Length: 138

Fln nts: TATTTGATCCGATGTGGGATTGCATCAAGGAAATGAAGAAAAAGGGGGTCGTGTCCTTGGTGTCATTCTCCTATATGTTTTGGAATTATGTGCATGACGGTAAGGTTGAGGAGGCAAGGATGACATTTGAGGTGATGGAGCAATATGGATTCCGATAGGATGTTGTTGCACTAAATTGTCTTCTCAGTGCGTTGTGCAGGAAAAAATAGGTGAAAGTGATGGTGGAATTCCTAGATAGAATGAAGGTGAGGATCACCCCAGATGTTGACACGTATGCATTGCTACTGGAGAGATGTGATATCGTACATGATGTGACTAATGCTAGAATCACCTTTGGAGAAATGGTTAGCCGCATCGGATGGCTGTTGAACAACATATCGGCTTATAATGCATTCTTGAGCATTCTGGTCAAT

Fln Alignment:

AllPineV4_rep_c77808___FDPMWDCIKEMKKKGVVSLVSFSYMFWNYVHDGKVEEARMTFEVMEQYGFR*DVVALNCLLSALCRKK*VKVMVEFLDRMKVRITPDVDTYALLLERCDIVHDVTNARITFGEMVSRIGWLLNNISAYNAFLSILVN
A9NUW1_______________FDAMWDCIKIMKNQGIVSTETLSSVFGNYVQAGKVDEARMTFEVMEQYGCRQDVVALNCYISALCRYKQVKAALEFFDSVKERIAPDADTYALLLEGWEIEGNVSNARSTFGEMIARLGWMPNNTSAYNAFLSTLVN

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain