SustainPineDB

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Assembly info
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene63311

Length: 477 nt

Origin of reads: Biogeco1 v2 Biogeco3 v1

UniGene Fasta

>sp_v2.0_unigene63311
CAAGGGAGATGGGCTGGGTGCTGAGATCATGGGCACCTTTGTATTGGTCTACACGGTTTGTTCTGCTACTGATGCCAAGAGAAAATCCAGGGATTCTCATATCCCATGCTTGGGATGACCAGTGGATTTTCTGGGTTGGACCCTTGGTTGGGGCTGCTCTTGCATCTCTTTATCACATGCTCATCATCCGAGGCATACCCTTCAAATCCCGTATTTAGTTTCTTTATTTATTTTATAGTAGCTTTCTATGCGAAGGGATTATAGTCAGTCTCCCTTCTCCTTTGGGCTATTGAAATCAGAAGAATAGCAGTAGTGTCTGTGTTGGGTTTCTGTGTTAGACTGTCATCAACTAATGCTCATAATGTTCTAATGTTGGAAAAGATATGCCGCAATACATAGATGTTTTGTACTCTGCTGTATGCAATAAACCATTTTATTGGCTATTGCATTGGTATTGAAGATGCCATGGATTCTGTC

Ace file of the UniGene sp_v2.0_unigene63311

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Aquaporin PIP1.3, putative n=1 Tax=Ricinus communis RepID=B9RDT3_RICCO	-	-	8.0e-25	77%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	83%
Blast2go	aquaporin	-	-	1.42506e-26	87%

Source	InterPros	Term	Type	Identity
Sma3	Major intrinsic protein	IPR000425	-	-
Sma3	Aminoacyl-tRNA synthetase, class I, conserved site	IPR001412	-	-
Sma3	Aquaporin	IPR012269	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NV12

Fln msg: Warning!, your query overlaps and the subject is separated, your sequence is shorter than subject: 73 - 292

Fln protein: KGDGLGAEIMGTFVLVYTVCSATDAKRKSRDSHIxxxxDDQWIFWVGPLVGAALASLYHMLIIRGIPFKSRI*

Protein Length: 74

Fln nts: CAAGGGAGATGGGCTGGGTGCTGAGATCATGGGCACCTTTGTATTGGTCTACACGGTTTGTTCTGCTACTGATGCCAAGAGAAAATCCAGGGATTCTCATATCxxxxxxxxxxxxGATGACCAGTGGATTTTCTGGGTTGGACCCTTGGTTGGGGCTGCTCTTGCATCTCTTTATCACATGCTCATCATCCGAGGCATACCCTTCAAATCCCGTATTTAGTTTCTTTATTTATTTTATAGTAGCTTTCTATGCGAAGGGATTATAGTCAGTCTCCCTTCTCCTTTGGGCTATTGAAATCAGAAGAATAGCAGTAGTGTCTGTGTTGGGTTTCTGTGTTAGACTGTCATCAACTAATGCTCATAATGTTCTAATGTTGGAAAAGATATGCCGCAATACATAGATGTTTTGTACTCTGCTGTATGCAATAAACCATTTTATTGGCTATTGCATTGGTATTGAAGATGCCATGGATTCTGTC

Fln Alignment:

AllPineV4_rep_c77735___KGDGLGAEIMGTFVLVYTVCSATDAKRKSRDSHIPCLxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxHAWDDQWIFWVGPLVGAALASLYHMLIIRGIPFKSR
A9NV12_______________KGDGLGAEIVGTFVLVYTVFSATDAKRSARDSHVPLLxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxHAWDDHWIFWVGPFIGAALAAFYHVIIIRAIPFKSR

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain