SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene63307

Length: 501 nt

Origin of reads: Biogeco1 v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene63307
ATGGGGACAACTCTGTGGCGGCGGGGCTTCGGTTTTCTTCAGCAGCGTAGAGTGGAGGATGTGATTTACTTGGAGAGAAAAATGGCTTATTTTGCGGTGTTGTTGTTTCTGCGCAGCTTGGATTAAATCTTAATAATCATGGCCGGAACGGTAGCAGATGCGACTTTGTTCGACGCTCGTCAGTATGACGCCAAGATGAAGGAAATACTTTCAACAGAAGGAGACGAGCTCTTTGCAAGCTACGATGAAGTTCACGAAAGCTTCGATGAAATGGGCTTACACGAGAATCTGCTTAGAGGCATCTACGCCTATGGGTTTGAGAAGCCATCTGCGATTCAGCAGAGGGGAATAGTGCCGTTCTGCAAGGGTCTTGATGTGATACAGCAGGCCCAGTCTGGAACGGGCAAGACAGCTACTTTCTGTTCCGGAATTCTGCAGCAACTCGACTATGGCTTGCTGGAATGCCAGGCTTTGGTTCTCGCCCCACCCGAGAGCTTGCAC

Ace file of the UniGene sp_v2.0_unigene63307 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	putative DEAD/DEAH box helicase [Narcissus pseudonarcissus]	-	-	80%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	95%
Blast2go	eukaryotic initiation factor 4a-10-like	-	-	86%

Source	InterPros	Term	Type	Identity
Sma3	RNA helicase, ATP-dependent, DEAD-box, conserved site	IPR000629	-	-
Sma3	Helicase, C-terminal	IPR001650	-	-
Sma3	WD40 repeat	IPR001680	-	-
Sma3	DNA/RNA helicase, DEAD/DEAH box type, N-terminal	IPR011545	-	-
Sma3	Helicase, superfamily 1/2, ATP-binding domain	IPR014001	-	-
Sma3	RNA helicase, DEAD-box type, Q motif	IPR014014	-	-
Sma3		IPR014021	-	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-
Sma3		IPR019782	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LRR8

Fln msg: Distance to subject end: 292 aas, your sequence is shorter than subject: 121 - 413

Fln protein: MAGTVADATLFDARQYDAKMKEILSTEGDELFASYDEVHESFDEMGLHENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLLECQALVLAPPESLH

Protein Length: 122

Fln nts: ATGGGGACAACTCTGTGGCGGCGGGGCTTCGGTTTTCTTCAGCAGCGTAGAGTGGAGGATGTGATTTACTTGGAGAGAAAAATGGCTTATTTTGCGGTGTTGTTGTTTCTGCGCAGCTTGGATTAAATCTTAATAATC_-_ATGGCCGGAACGGTAGCAGATGCGACTTTGTTCGACGCTCGTCAGTATGACGCCAAGATGAAGGAAATACTTTCAACAGAAGGAGACGAGCTCTTTGCAAGCTACGATGAAGTTCACGAAAGCTTCGATGAAATGGGCTTACACGAGAATCTGCTTAGAGGCATCTACGCCTATGGGTTTGAGAAGCCATCTGCGATTCAGCAGAGGGGAATAGTGCCGTTCTGCAAGGGTCTTGATGTGATACAGCAGGCCCAGTCTGGAACGGGCAAGACAGCTACTTTCTGTTCCGGAATTCTGCAGCAACTCGACTATGGCTTGCTGGAATGCCAGGCTTTGGTTCTCGCCCCACCCGAGAGCTTGCAC

Fln Alignment:

AllPineV4_rep_c77726___MAGTVADATLFDARQYDAKMKEILSTEGDELFASYDEVHESFDEMGLHENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLLECQALVLAPPESL
B8LRR8_______________MAGVVADATLFDARQYDAKMKEILSTEGDELFASYDEVHESFDEMGLHENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLLDCQALVLAPTREL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain