SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene63290

Length: 496 nt

UniGene Fasta

>sp_v2.0_unigene63290
ATGGGGAAAATGGAAGGCATGGTTTGATTTGGATAGAATCTCGAGGAAAAGCCAGCCTCCCTTCTTCGTCCCGACAGGCGATCGACAGAAATATGTTATTTTACTGCAAAGCTACGAAAATCCTCCAAGATGAGGCGATGGAGAAATTGCTCGGGAGCATGAGGCGTATAGTTCTTCGCACTCGCTACTTCTCCACAGTTGTTTCTAATGGGACGAACGTATTACTGTGGTAGTGCAAGGGAAGAGATAAGCCCTGCAAAGAATTCCCATTTTAAAGACCTGAAGCCGTGCGAGGCCAACAGAGATCCATTATCCCCAATAAGTTTCCTGGAGAGAGCAAGCAGCGTGTATAGAGAAGGAACTTCAGTTGTCTATGGATCTACTCGATTTACGTGGGCGGAAACAGCAGAGCGCTGTCGCAGGCTTGCCTCCGTGCTTCGCTCTCTCAATGTCAAAACCGGAGACGTTGTAAGTTATAGACAATCTGTGGCTCTTA

Ace file of the UniGene sp_v2.0_unigene63290

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Acyl:coa ligase acetate-coa synthetase-like protein (Fragment) n=1 Tax=Populus trichocarpa RepID=B9H653_POPTR	-	-	4.0e-16	66%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	44%
Blast2go	acyl:coa ligase acetate-coa synthetase-like protein	-	-	3.6191e-19	72%

Source	ECs	Term	Type	e value	Identity
Blast2go	Benzoate--CoA ligase.	EC:6.2.1.25	-	3.6191e-19	72%

Source	KEGGs	Term	e value	Identity
Blast2go	Benzoate degradation	00362	3.6191e-19	72%
Blast2go	Aminobenzoate degradation	00627	3.6191e-19	72%
Blast2go	Metabolic pathways	01100	3.6191e-19	72%

Source	GOs	Term	Type	e value	Identity
Blast2go	glucosinolate biosynthetic process	GO:0019761	Biological Process	3.6191e-19	72%
Blast2go	benzoate-CoA ligase activity	GO:0018858	Molecular Function	3.6191e-19	72%

Source	InterPros	Term	Type	Identity
Sma3	AMP-dependent synthetase/ligase	IPR000873	-	-
Sma3	Lipocalin	IPR002345	-	-
Sma3	Glycoside hydrolase, family 5, conserved site	IPR018087	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NWM6

Fln msg: Distance to subject end: 486 aas, your sequence is shorter than subject: 96 - 569

Fln protein: MGRTYYCGSAREEISPAKNSHFKDLKPCEANRDPLSPISFLERASSVYREGTSVVYGSTRFTWAETAERCRRLASVLRSLNVKTGDVVSYRQSVAL

Protein Length: 97

Fln nts: ATGGGGAAAATGGAAGGCATGGTTTGATTTGGATAGAATCTCGAGGAAAAGCCAGCCTCCCTTCTTCGTCCCGACAGGCGATCGACAGAAATATGTTATTTTACTGCAAAGCTACGAAAATCCTCCAAGATGAGGCGATGGAGAAATTGCTCGGGAGCATGAGGCGTATAGTTCTTCGCACTCGCTACTTCTCCACAGTTGTTTCTA_-_ATGGGACGAACGTATTACTGTGGTAGTGCAAGGGAAGAGATAAGCCCTGCAAAGAATTCCCATTTTAAAGACCTGAAGCCGTGCGAGGCCAACAGAGATCCATTATCCCCAATAAGTTTCCTGGAGAGAGCAAGCAGCGTGTATAGAGAAGGAACTTCAGTTGTCTATGGATCTACTCGATTTACGTGGGCGGAAACAGCAGAGCGCTGTCGCAGGCTTGCCTCCGTGCTTCGCTCTCTCAATGTCAAAACaGGAGACGTTGTAAGTTATAGACAATCTGTGGCTCTTA

Fln Alignment:

AllPineV4_rep_c77683___DLKPCEANRDPLSPISFLERASSVYREGTSVVYGSTRFTWAETAERCRRLASVLRSLNVKTGDVV
A9NWM6_______________DLPKCPANYTALTPLWFIQRAALVYPKRKSVIHGARQYTWDQTYERCRRLASALAKRSIGPGTTV

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
71		66	33		0.997459
72		66		33	0.997459
76	66	33			0.997457
77			66	33	0.997459
348	33		66		0.997454

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain