SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene63175

Length: 542 nt

Origin of reads: Uagpf v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene63175
CGTCGTGACCTTGGCTGTCACTCATTCTCCAACTTGCAGATCCTTGCACTCGATGGCAATCAGTTCACCCGCAGCATTCCTCCAGAGATTGGCCATTTGAAGCAGTTGTCCAAGATGGATTTCAGCGGTAACAGATTTTCTGGAGCAATACCTCCCGAGATAAGTGACTGTAAGCACATGGACCTCATAGATTTGAGTAGGAATGAGCTCAGTGGACCCATACCTCCACAGTTAACCAAGATGAAGATTCTCAATTATCTCAATATCTCTAGAAACCATTTGGTTGGAAGCATAACTTTAGAGGTTGAAAGCATGCTAAGCCTAACATCTGTGGATTTCTCCTACAACAATTTCTGAGATTTAGTTCCTAGTACTGGCCAGTTCACTTACTTCAATGCAACTTCCTCTGCGGGTAAATCCTTACCTCTGTGGACCATATTTGGGACCTTGCCGTGACATATCTGCCTCAAAGGAAGCCCTTCTCAAAGGTCCATTTTCTTCAACTTTCAAGCTGCTTTTGGTCACTTCTCATTTGTTCCCAT

Ace file of the UniGene sp_v2.0_unigene63175 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	receptor-like protein kinase 1 [Glycine max]	-	-	65%
FL-Next	tr=Receptor protein kinase; Pinus sylvestris (Scots pine).	-	-	37%
Blast2go	receptor-like protein kinase	-	-	77%

Source	ECs	Term	Type	e value	Identity
Blast2go	Beta-amylase.	EC:3.2.1.2	-	0.0	77%

Source	KEGGs	Term	Type	e value	Identity
Blast2go	Starch and sucrose metabolism	00500		0.0	77%
Blast2go	Metabolic pathways	01100		0.0	77%

Source	GOs	Term	Type	Identity
Blast2go	regulation of meristem structural organization	GO:0009934	Biological Process	77%
Blast2go	response to water deprivation	GO:0009414	Biological Process	77%
Blast2go	microsporocyte differentiation	GO:0010480	Biological Process	77%
Blast2go	starch catabolic process	GO:0005983	Biological Process	77%
Blast2go	regulation of meristem growth	GO:0010075	Biological Process	77%
Blast2go	gametophyte development	GO:0048229	Biological Process	77%
Blast2go	beta-amylase activity	GO:0016161	Molecular Function	77%
Blast2go	protein self-association	GO:0043621	Molecular Function	77%
Blast2go	transferase activity	GO:0016740	Molecular Function	77%
Blast2go	receptor serine/threonine kinase binding	GO:0033612	Molecular Function	77%
Blast2go	chloroplast	GO:0009507	Cellular Component	77%
Blast2go	cytosol	GO:0005829	Cellular Component	77%
Blast2go	plasma membrane	GO:0005886	Cellular Component	77%
Blast2go	nucleus	GO:0005634	Cellular Component	77%

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Enolpyruvate transferase domain	IPR001986	-	-
Sma3	Aminotransferases, class-I, pyridoxal-phosphate-binding site	IPR004838	-	-
Sma3	Retrotransposon gag protein	IPR005162	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: Q9FEU2

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 416 aas, your sequence is shorter than subject: 119 - 1145

Fln protein: RRDLGCHSFSNLQILALDGNQFTRSIPPEIGHLKQLSKMDFSGNRFSGAIPPEISDCKHMDLIDLSRNELSGPIPPQLTKMKILNYLNISRNHLVGSITLEVESMLSLTSVDFSYNNF*

Protein Length: 120

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTCTCCAACTTGCAGATCCTTGCACTCGATGGCAATCAGTTCACCCGCAGCATTCCTCCAGAGATTGGCCATTTGAAGCAGTTGTCCAAGATGGATTTCAGCGGTAACAGATTTTCTGGAGCAATACCTCCCGAGATAAGTGACTGTAAGCACATGGACCTCATAGATTTGAGTAGGAATGAGCTCAGTGGACCCATACCTCCACAGTTAACCAAGATGAAGATTCTCAATTATCTCAATATCTCTAGAAACCATTTGGTTGGAAGCATAACTTTAGAGGTTGAAAGCATGCTAAGCCTAACATCTGTGGATTTCTCCTACAACAATTTCTGAGATTTAGTTCCTAGTACTGGCCAGTTCACTTACTTCAATGCAACTTCCTCTGCGGGTAAATCCTTACCTCTGTGGACCATATTTGGGACCTTGCCGTGACATATCTGCCTCAAAGGAAGCCCTTCTCAAAGGTCCATTTTCTTCAACTTTCAAGCTGCTTTTGGTCACTTCTCATTTGTTCCCAT

Fln Alignment:

AllPineV4_c77478___RDLGCHSFSNLQILALDGNQFTRSIPPEIGHLKQLSKMDFSGNRFSGAIPPEISDCKHMDLIDLSRNELSGPIPPQLTKMKILNYLNISRNHLVGSITLEVESMLSLTSVDFSYNNF*DLVP
Q9FEU2_______________REIG--KLENLVFLDLAMNQFSGSIPAEIGGCSQLQMLDLHGNRLGGELPRALGFLHGLQVVDLSANELTGLIPANLGNLVALTKLTLNGNALSGAIPWEISRCTNLQLLDLSLNRFSGQIP

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain