SustainPineDB

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Assembly info
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene63169

Length: 395 nt

Origin of reads: Uagpf v2

UniGene Fasta

>sp_v2.0_unigene63169
AGCACTTCATGATAACATGCTCAGCCAAACAAGTAACCGAAAAGATCAGAAGGAGGATCTTTAGACAGAGATGCTGTTTTAGCGACGCTTGATGTTGGCTGTGATTCTCTCGTCAAAGCATGGGAAGAAAATGAGAAAGCAAAAGCTGAGAACAAATTCTACAAGGCAGTGTCAACCATTACAGCATGGGAAAATACGAAGAAGTCAGCTGCAGAAACAAAGATGAAAAGAGCTGAGGAGAAGTTGGAGAAGCAGAAAGCAGCATATGTTGAGAAAATGAAAAATGAGATTGCTATTATCCACAAGAAGGCAGAGGAAAAGGCCATGGTTGAGGCTAAACGAGGAGAGGAGTTTCTTAAGGCAGAGGAGTTGAGTGCCAAATATAACGCAACAGG

Ace file of the UniGene sp_v2.0_unigene63169

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Remorin, putative n=1 Tax=Ricinus communis RepID=B9RDP4_RICCO	-	-	5.0e-19	42%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	79%
Blast2go	remorin	-	-	6.46461e-32	77%

Source	GOs	Term	Type	e value	Identity
Blast2go	galacturonate binding	GO:0048032	Molecular Function	6.46461e-32	77%
Blast2go	protein binding	GO:0005515	Molecular Function	6.46461e-32	77%
Blast2go	plasma membrane	GO:0005886	Cellular Component	6.46461e-32	77%

Source	InterPros	Term	Type	e value	Identity
Sma3	Remorin, C-terminal	IPR005516	-	0.0	-
Sma3	Remorin, N-terminal	IPR005518	-	0.0	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NRP1

Fln msg: Unexpected stop codon in the beginning of your sequence, STOP codon was not found. Distance to subject end: 12 aas, your sequence is shorter than subject: 131 - 197

Fln protein: STS**HAQPNK*PKRSEGGSLDRDAVLATLDVGCDSLVKAWEENEKAKAENKFYKAVSTITAWENTKKSAAETKMKRAEEKLEKQKAAYVEKMKNEIAIIHKKAEEKAMVEAKRGEEFLKAEELSAKYNAT

Protein Length: 132

Fln nts: AGCACTTCATGATAACATGCTCAGCCAAACAAGTAACCGAAAAGATCAGAAGGAGGATCTTTAGACAGAGATGCTGTTTTAGCGACGCTTGATGTTGGCTGTGATTCTCTCGTCAAAGCATGGGAAGAAAATGAGAAAGCAAAAGCTGAGAACAAATTCTACAAGGCAGTGTCAACCATTACAGCATGGGAAAATACGAAGAAGTCAGCTGCAGAAACAAAGATGAAAAGAGCTGAGGAGAAGTTGGAGAAGCAGAAAGCAGCATATGTTGAGAAAATGAAAAATGAGATTGCTATTATCCACAAGAAGGCAGAGGAAAAGGCCATGGTTGAGGCTAAACGAGGAGAGGAGTTTCTTAAGGCAGAGGAGTTGAGTGCCAAATATAACGCAACAGG

Fln Alignment:

AllPineV4_rep_c77466___KRSEGGSLDRDAVLATLDVGCD-SLVXXXXXXXXXXXXXXXXXXVSTITAWENTKKSAAETKMKRAEEKLEKQKAAYVEKMKNEIAIIH-XXXXXXXXXXXXRGEEFLKAEELSAKYNAT
A9NRP1_______________KSSEGGSLDRDAFLVKVNTEKRLALVKAWEENEKAKAENKYYKSVSTITAWENTKKSSAETRMKRAEEKLEKQKAAYVEKMKNEIAIIHKQAEEKKAMAEAKRGEDMLKAEESSAKYNAT

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain