SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene63054

Length: 254 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene63054
AATGTAACTTGCATCAGGAGCAATCTCTGGCTCCTTTGCTACTGCACTGACAAATCCTGCAGAAGTTTTGAAGGTTCGCTTGCAAATGAAAAATGGATCTGGAAGTAGAGGACCAATTTACGAAATGTGTGAGATTGTTGCTGTAGAGGGAGTGGCGGGTCTGTGGAAGGGGGTGGGACCTGCAATGGCAAGAGCTGCTGCATTAACAGCATCACAGCTAGCAACATATGATGAAACCAAGCAGGCTCTAATGC

Ace file of the UniGene sp_v2.0_unigene63054 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	pfam00153, Mito_carr, Mitochondrial carrier protein	-	-	6.0e-18	37%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	39%
Blast2go	mitochondrial substrate carrier family protein	-	-	2.97231e-19	75%

Source	InterPros	Term	Type	Identity
Sma3		IPR001993	-	-
Sma3	Mitochondrial carrier protein	IPR002067	-	-
Sma3	Mitochondrial substrate/solute carrier	IPR018108	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9P2P8

Fln msg: Unexpected stop codon in the beginning of your sequence, Distance to subject end: 98 aas, your sequence is shorter than subject: 84 - 301

Fln protein: M*LASGAISGSFATALTNPAEVLKVRLQMKNGSGSRGPIYEMCEIVAVEGVAGLWKGVGPAMARAAALTASQLATYDETKQALM

Protein Length: 85

Fln nts: AATGTAACTTGCATCAGGAGCAATCTCTGGCTCCTTTGCTACTGCACTGACAAATCCTGCAGAAGTTTTGAAGGTTCGCTTGCAAATGAAAAATGGATCTGGAAGTAGAGGACCAATTTACGAAATGTGTGAGATTGTTGCTGTAGAGGGAGTGGCGGGTCTGTGGAAGGGGGTGGGACCTGCAATGGCAAGAGCTGCTGCATTAACAGCATCACAGCTAGCAACATATGATGAAACCAAGCAGGCTCTAATGC

Fln Alignment:

AllPineV4_rep_c77246___GAISGSFATALTNPAEVLKVRLQ----MKNGSGSRGPIYEMCEIVAVEGVAGLWKGVGPXXXXXXXXXXXXXXTYDETKQALM
A9P2P8_______________GGLSGIIGQVVASPADLIKVRMQADGRMVNPRYS-GLADAFAKIVRAEGVAGLWRGVLPNVQRAFLVNMGELACYDQAKRAIV

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
98		66		33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain