SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene63027

Length: 516 nt

Origin of reads: Uma v2

UniGene Fasta

>sp_v2.0_unigene63027
ATGGGGATGGAGTAGTATAGACCGACAGTCGGACCCCAGATGTTAAACGAAGCCTTCCAGATGAGGTCATAGACAAGAGCAACAATTGGATATTCACTGATATCACTAATTCGGGTCAGTGTAGGTCTCTCAGGTTGCCTGACAGAATGCATTTGAGCAAGGTCTCTCAGGTTTCCTGACAGAATGCATACGAGCAAGGTGGTAAAACTGATATACACCAATTCCGGTGTTGTTGTCTTAGCATTGACATCCAGTGGTCCCCATAAGCTATGGAAATGGTTGTGGAGTGAACGGAATCCATCCGGAAAGGTTTGAGGCTCCTTCCTGGTGAATGACTTCTGCTGAGAGGCTCCTGTTGAAAGGTTCTCTCTATAGGCTTATTGCTTTTGGTAAGAGTTTATAGATTATATGTTTACTGTTTACAGGTTTTTGCTATGGCTTGTGGTAAGAGTTTATAGATACATAACTATAATATAAACGTAACTATGTATACTATGTGGTCTAAATGAAAATAAG

Ace file of the UniGene sp_v2.0_unigene63027

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	WD-40 repeat protein-like n=7 Tax=Poaceae RepID=Q7EYE2_ORYSJ	-	-	1.0e-15	58%
FL-Next	sp=Topless-related protein 4; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	60%
Blast2go	ramosa 1 enhancer locus 2	-	-	1.77751e-15	74%

Source	InterPros	Term	Type	Identity
Sma3	WD40 repeat	IPR001680	-	-
Sma3	LisH dimerisation motif	IPR006594	-	-
Sma3	CTLH, C-terminal LisH motif	IPR006595	-	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-
Sma3		IPR019782	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q27GK7

Fln msg: Unexpected stop codon in the beginning of your sequence, Unexpected STOP codon at 3' end. Distance to subject end: 249 aas, your sequence is shorter than subject: 105 - 1135

Fln protein: MGME*YRPTVGPQMLNEAFQMRS*TRATIGYSLISLIRVSVGLSGCLTECI*ARSLRFPDRMHTSKVVKLIYTNSGVVVLALTSSGPHKLWKWLWSERNPSGKV*

Protein Length: 106

Fln nts: ATGGGGATGGAGTAGTATAGACCGACAGTCGGACCCCAGATGTTAAACGAAGCCTTCCAGATGAGGTCATAGACAAGAGCAACAATTGGATATTCACTGATATCACTAATTCGGGTCAGTGTAGGTCTCTCAGGTTGCCTGACAGAATGCATTTGAGCAAGGTCTCTCAGGTTTCCTGACAGAATGCATACGAGCAAGGTGGTAAAACTGATATACACCAATTCCGGTGTTGTTGTCTTAGCATTGACATCCAGTGGTCCCCATAAGCTATGGAAATGGTTGTGGAGTGAACGGAATCCATCCGGAAAGGTTTGAGGCTCCTTCCTGGTGAATGACTTCTGCTGAGAGGCTCCTGTTGAAAGGTTCTCTCTATAGGCTTATTGCTTTTGGTAAGAGTTTATAGATTATATGTTTACTGTTTACAGGTTTTTGCTATGGCTTGTGGTAAGAGTTTATAGATACATAACTATAATATAAACGTAACTATGTATACTATGTGGTCTAAATGAAAATAAG

Fln Alignment:

AllPineV4_rep_c77182___RSLRFPDRMHTSKVVKLIYTNSGVVVLALTSSGPHKLWKWLWSERNPSGK
Q27GK7_______________RTLRLPDTLLPARVVKLIYTNSGGAILALAENAAHKLWKWQKSERNLLGK

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
236	33			66	0.997453
259		33	66		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain