SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene62918

Length: 403 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene62918
CGTCGTGACCTTGGCTGTCACTCAGGTGCTAAAGCCAACCCAATCACCATTGTTAGTGTTCTGCCTGTGTGTGCCGATTTATTGGCTTTGGAACAAGGTAAGCAGATCCATGGTTATGCAATAAGAAGTGGATTTGAATCTGATGTTGTTGTAGGCAGTGGGCTTGTGGACATGTATGCTAAATGTGGGAATGTTAACATTGCTCATAGATTGTTTAAAAGAATGCCCAAACAAAATGTTGTGGCATGGAATACGATGATTCTGGCGTACGGAATTCATGGCCATGGTGAGGATGCTCTTGCTCTTTTCTCCCAAATGCAAAAGAGGGACACAAAACCTGATCATATCACCTTCACTGCTATTTTGACTGCCTGTTCTCATGCAGGGTTAGTTGATCAACATT

Ace file of the UniGene sp_v2.0_unigene62918 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Pentatricopeptide repeat-containing protein, putative n=1 Tax=Ricinus communis RepID=B9T392_RICCO	-	-	4.0e-34	52%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	38%
Blast2go	pentatricopeptide repeat-containing protein	-	-	0.0	72%

Source	GOs	Term	Type	e value	Identity
Blast2go	chloroplast RNA processing	GO:0031425	Biological Process	0.0	72%
Blast2go	chloroplast	GO:0009507	Cellular Component	0.0	72%

Source	InterPros	Term	Type	Identity
Sma3	Ribonuclease P	IPR000100	-	-
Sma3	Diacylglycerol kinase, accessory domain	IPR000756	-	-
Sma3	Diacylglycerol kinase, catalytic domain	IPR001206	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	Domain of unknown function DUF659	IPR007021	-	-
Sma3		IPR011523	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	Thioredoxin, conserved site	IPR017937	-	-
Sma3	Asp/Glu racemase, active site	IPR018187	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LQA8

Fln msg: Distance to subject end: 252 aas, your sequence is shorter than subject: 134 - 795

Fln protein: RRDLGCHSGAKANPITIVSVLPVCADLLALEQGKQIHGYAIRSGFESDVVVGSGLVDMYAKCGNVNIAHRLFKRMPKQNVVAWNTMILAYGIHGHGEDALALFSQMQKRDTKPDHITFTAILTACSHAGLVDQH

Protein Length: 135

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGGTGCTAAAGCCAACCCAATCACCATTGTTAGTGTTCTGCCTGTGTGTGCCGATTTATTGGCTTTGGAACAAGGTAAGCAGATCCATGGTTATGCAATAAGAAGTGGATTTGAATCTGATGTTGTTGTAGGCAGTGGGCTTGTGGACATGTATGCTAAATGTGGGAATGTTAACATTGCTCATAGATTGTTTAAAAGAATGCCCAAACAAAATGTTGTGGCATGGAATACGATGATTCTGGCGTACGGAATTCATGGCCATGGTGAGGATGCTCTTGCTCTTTTCTCCCAAATGCAAAAGAGGGACACAAAACCTGATCATATCACCTTCACTGCTATTTTGACTGCCTGTTCTCATGCAGGGTTAGTTGATCAACATT

Fln Alignment:

AllPineV4_rep_c76924___SGAKANPITIVSVLPVCADLLALEQGKQIHGYAIRSGFESDVVVGSGLVDMYAKCGNVNIAHRLFKRMPKQNVVAWNTMILAYGIHGHGEDALALFSQMQKRDTKPDHITFTAILTACSHAGLVDQ
B8LQA8_______________TGINPDKLVFLSVIKACGSQSDLQAGRKVHEDIIARGFESDVIVGTALASMYTKCGSLENARQVFDRMPKRDVVSWNAIIAGYSQNGQPYEALALFSEMQVNGIKPNSSTLVSVMPVCAHLLALEQ

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
215		66		33	0.997452
235		66		33	0.997452
236		66		33	0.997452
238		66		33	0.997452
246		66		33	0.997476
253	33	66			0.997452
259		66		33	0.997453
285	33		66		0.997454
299		66		33	0.997452
302		66		33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain