SustainPineDB

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Assembly info
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene62898

Length: 464 nt

Origin of reads: Biogeco1 v2

UniGene Fasta

>sp_v2.0_unigene62898
AGGAATTCAACACTCGCAGACTGTGTACTGCCTCCTTCAATGATTTATGATACCTTTTGTTATAGTGCTACCTTTTGCTGAGGAGTGAATGCTTCCTGCCTTTCAGGTAAGAAGAAAGCGTCATGGCTAATACTGCATGTTTCGTGATTGTGGGCCGCAATGACATTCCCATCTATGAAGCTGAAGTTGGTACAGCCATCAAAAAAGAGGAAGCTACATACCAACACCAGTTTATCTTACATGCAGCTTTGGACATTGTTCAAGATCTCCAATGGACAACAAGTGCTATGTTTTTAAAGGCTGTTGACAGATTCAATGACCTGATTGTAATCTGTATATGTAACTGCAGGTCATATCCTTTATGTTAAGTTCACTGTCTGTGCCTTTTGTATTTTAGTTGTAGTTTTTATGTTAATGTGCAATTCTAATGGACCATGTTTTAAATAATCCGTATTGTTGTATTA

Ace file of the UniGene sp_v2.0_unigene62898

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	[N] COG5603 Subunit of TRAPP, an ER-Golgi tethering complex	-	-	7.0e-10	39%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	82%
Blast2go	trafficking protein particle complex protein 2	-	-	1.17066e-34	90%

Source	InterPros	Term	Type	e value	Identity
Sma3	Sedlin	IPR006722	-	0.0	-

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: tr_plants

Fln subject: D7U0Y7

Fln msg: query STOP codon too far from subject stop. Distance to subject end: 48 aas, putative chimeric sequence, your sequence is shorter than subject: 82 - 129

Fln protein: MANTACFVIVGRNDIPIYEAEVGTAIKKEEATYQHQFILHAALDIVQDLQWTTSAMFLKAVDRFNDLIVICICNCRSYPLC*

Protein Length: 83

Fln nts: AGGAATTCAACACTCGCAGACTGTGTACTGCCTCCTTCAATGATTTATGATACCTTTTGTTATAGTGCTACCTTTTGCTGAGGAGTGAATGCTTCCTGCCTTTCAGGTAAGAAGAAAGCGTC_-_ATGGCTAATACTGCATGTTTCGTGATTGTGGGCCGCAATGACATTCCCATCTATGAAGCTGAAGTTGGTACAGCCATCAAAAAAGAGGAAGCTACATACCAACACCAGTTTATCTTACATGCAGCTTTGGACATTGTTCAAGATCTCCAATGGACAACAAGTGCTATGTTTTTAAAGGCTGTTGACAGATTCAATGACCTGATTGTAATCTGTATATGTAACTGCAGGTCATATCCTTTATGTTAA___GTTCACTGTCTGTGCCTTTTGTATTTTAGTTGTAGTTTTTATGTTAATGTGCAATTCTAATGGACCATGTTTTAAATAATCCGTATTGTTGTATTA

Fln Alignment:

AllPineV4_rep_c76865___MANTACFVIVGRNDIPIYEAEVGTAIKKEEATYQHQFILHAALDIVQDLQWTTSAMFLKAVDRFNDLIV
D7U0Y7_______________MASTACFIIVSRNDIPIYEAEVGSAVKKEDAAQQHQFILHAALDVVQDLAWTTSAMFLKAIDRFNDLVV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain