SustainPineDB

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Assembly info
Unigenes
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SSRs
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GOs
ECs
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene62859

Length: 329 nt

Origin of reads: Biogeco1 v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v2.0_unigene62859
GGAAAAACATAATTATTGATTGTTGTTGCTGTTGAAGCTGTGACTGTACGAAAATAAATACAATAAAATGTCTGCAGCTCAAGATCCATTTTATATAGTCAAGGACGAGATTCAGGATTCTGTGGATAAATTGCAGACTACATTCAGAAGATGGGAACAACTCTTTCCAAGTTCAGGGGAAAGGATTCATCTTACAAAAGAGCTGCTGGCAGGATGTGAAAGCATTGAATGGCAGGTAGATGAGCTTGGAAGGGCCATTGCAGTGGCAGAACGGGATCCAGCACGGTTTAGTATTGATGAAGTTGAACTTGCGAAGCGTAAGAGATGGA

Ace file of the UniGene sp_v2.0_unigene62859 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	pfam09177, Syntaxin-6_N, Syntaxin 6, N-terminal	-	-	3.0e-27	44%
FL-Next	sp=Syntaxin-61; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	64%
Blast2go	protein	-	-	2.6484e-37	83%

Source	GOs	Term	Type	e value	Identity
Blast2go	cellular process	GO:0009987	Biological Process	2.6484e-37	83%

Source	InterPros	Term	Type	Identity
Sma3	Target SNARE coiled-coil domain	IPR000727	-	-
Sma3	Syntaxin/epimorphin, conserved site	IPR006012	-	-
Sma3	Syntaxin 6, N-terminal	IPR015260	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: sp_plants

Fln subject: Q946Y7

Fln msg: Distance to subject end: 158 aas, your sequence is shorter than subject: 87 - 245

Fln protein: MSAAQDPFYIVKDEIQDSVDKLQTTFRRWEQLFPSSGERIHLTKELLAGCESIEWQVDELGRAIAVAERDPARFSIDEVELAKRKRW

Protein Length: 88

Fln nts: GGAAAAACATAATTATTGATTGTTGTTGCTGTTGAAGCTGTGACTGTACGAAAATAAATACAATAAA_-_ATGTCTGCAGCTCAAGATCCATTTTATATAGTCAAGGACGAGATTCAGGATTCTGTGGATAAATTGCAGACTACATTCAGAAGATGGGAACAACTCTTTCCAAGTTCAGGGGAAAGGATTCATCTTACAAAAGAGCTGCTGGCAGGATGTGAAAGCATTGAATGGCAGGTAGATGAGCTTGGAAGGGCCATTGCAGTGGCAGAACGGGATCCAGCACGGTTTAGTATTGATGAAGTTGAACTTGCGAAGCGTAAGAGATGGA

Fln Alignment:

AllPineV4_rep_c76750___MSAAQDPFYIVKDEIQDSVDKLQTTFRRWEQLFPSSGERIHLTKELLAGCESIEWQVDELGRAIAVAERDPARFSIDEVELAKRKRW
Q946Y7_______________MSSAQDPFYIVKEEIQDSIDKLQSTFHKWERISPDMGDQAHVAKELVATCGSIEWQVDELEKAITVAAKDPSWYGIDEAELEKRRRW

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain