SustainPineDB

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Assembly info
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene62832

Length: 391 nt

Origin of reads: Uagpf v2

UniGene Fasta

>sp_v2.0_unigene62832
CGTCGTGACCTTGGCTGTCACTCATTTCTTTCTTTAGTGTTTTCCGAACCTCCGCTCGTGCCTTTCAATCGAAATTGGAGGTTGGACATTATTCAGGGTTTTATTTGAATTCGATCAAAGGTTTTGTTCCTTGTAGAAAGATTCACCAGAATTGATTTTTACGATAGACGTCGAAGTGTAAATTTATTGCTCCGACATCAATTTTCTTACACAGGTAGATTTGTTTCAATTTGATGGCATCATTTTCGAGGCTTCCTGGCTTTGGTTTCCACCCAACAGATGAAGAACTCGTTGCTTATTACTTGAAGAGGAAAGTACATGGCCATAAGATTGAGCATGACATTATTCCTGAGGTGGACCTTTATAAGTGCGAACCATGGGATTTGCCTGA

Ace file of the UniGene sp_v2.0_unigene62832

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	NAC domain protein, IPR003441 n=1 Tax=Populus trichocarpa RepID=B9MWW7_POPTR	-	-	7.0e-18	88%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	63%
Blast2go	nac domain ipr003441	-	-	2.97649e-21	85%

Source	InterPros	Term	Type	Identity
Sma3	7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK	IPR000550	-	-
Sma3	No apical meristem (NAM) protein	IPR003441	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-
Sma3	Cytochrome c oxidase biogenesis protein Cmc1-like	IPR013892	-	-
Sma3	Glycoside hydrolase, family 9, active site	IPR018221	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9P1L9

Fln msg: Distance to subject end: 97 aas, your sequence is shorter than subject: 52 - 150

Fln protein: MASFSRLPGFGFHPTDEELVAYYLKRKVHGHKIEHDIIPEVDLYKCEPWDLP

Protein Length: 53

Fln nts: CGTCGTGACCTTGGCTGTCACTCATTTCTTTCTTTAGTGTTTTCCGAACCTCCGCTCGTGCCTTTCAATCGAAATTGGAGGTTGGACATTATTCAGGGTTTTATTTGAATTCGATCAAAGGTTTTGTTCCTTGTAGAAAGATTCACCAGAATTGATTTTTACGATAGACGTCGAAGTGTAAATTTATTGCTCCGACATCAATTTTCTTACACAGGTAGATTTGTTTCAATTTG_-_ATGGCATCATTTTCGAGGCTTCCTGGCTTTGGTTTCCACCCAACAGATGAAGAACTCGTTGCTTATTACTTGAAGAGGAAAGTACATGGCCATAAGATTGAGCATGACATTATTCCTGAGGTGGACCTTTATAAGTGCGAACCATGGGATTTGCCTGA

Fln Alignment:

AllPineV4_c76689___MASFSRLPGFGFHPTDEELVAYYLKRKVHGHKIEHDIIPEVDLYKCEPWDLP
A9P1L9_______________MDQVSLQPGFRFHPTDEELVSYYLKRKVRGQRFDFNAISEIDLYKFEPRDLP

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain