SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene62828

Length: 456 nt

Origin of reads: Biogeco1 v2 Uagpf v2

UniGene Fasta

>sp_v2.0_unigene62828
CGTCGTGACCTTGGCTGTCACTCAATTTTTCGCATTTTTCCTTGTATTTTCAACCCATCGAATCTGTTAAACTCATCTTAGCAGAGGAGTTCTGGGTCCAGTTACTCAATTTAGCTTCCGAAAATAATTATAAAATTCAAAGGCACTGGCTACTCTCCTTTAATCGAGGAGGAGGAAGAAGCAGCAGCAATGGGTTCTTGCTCAACAGGATCATCCACTGGCAGTAATTTTCGAGAGCTCGATGTTGAATTTCTGCAAACACAAGCAAAAATATGGATAGAACAAGTTTTAGAGAAAAGATTTCATGATGAGGACACTCTTGTAGATTTACTTGCTGATGGAGAAATTCTGTTCAAAATATCTAAAATAATTAGTGAATTGATGCGAACGAGATTTGGTGCAAAAATTGATTCTCCGGATACATTCCCGGAAGCAGCTGCTTTTGCAAAGCATGGT

Ace file of the UniGene sp_v2.0_unigene62828

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	92%
Blast2go	protein	-	-	3.55429e-38	74%

Source	InterPros	Term	Type	Identity
Sma3	Calponin homology domain	IPR001715	-	-
Sma3	Peptidoglycan-binding Lysin subgroup	IPR002482	-	-
Sma3	Peptidoglycan-binding lysin domain	IPR018392	-	-

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LS30

Fln msg: Distance to subject end: 688 aas, your sequence is shorter than subject: 89 - 777

Fln protein: MGSCSTGSSTGSNFRELDVEFLQTQAKIWIEQVLEKRFHDEDTLVDLLADGEILFKISKIISELMRTRFGAKIDSPDTFPEAAAFAKHG

Protein Length: 90

Fln nts: CGTCGTGACCTTGGCTGTCACTCAATTTTTCGCATTTTTCCTTGTATTTTCAACCCATCGAATCTGTTAAACTCATCTTAGCAGAGGAGTTCTGGGTCCAGTTACTCAATTTAGCTTCCGAAAATAATTATAAAATTCAAAGGCACTGGCTACTCTCCTTTAATCGAGGAGGAGGAAGAAGCAGCAGCA_-_ATGGGTTCTTGCTCAACAGGATCATCCACTGGCAGTAATTTTCGAGAGCTCGATGTTGAATTTCTGCAAACACAAGCAAAAATATGGATAGAACAAGTTTTAGAGAAAAGATTTCATGATGAGGACACTCTTGTAGATTTACTTGCTGATGGAGAAATTCTGTTCAAAATATCTAAAATAATTAGTGAATTGATGCGAACGAGATTTGGTGCAAAAATTGATTCTCCGGATACATTCCCGGAAGCAGCTGCTTTTGCAAAGCATGGT

Fln Alignment:

AllPineV4_rep_c76678___NFRELDVEFLQTQAKIWIEQVLEKRFHDEDTLVDLLADGEILFKISKIISELMRTRFGAKIDSPDTFPEAAAFAKHG
B8LS30_______________NFRELDVEFLQTQAKIWIEQVLEKRFDDEETVVDLLADGEILFKVSKIISELMRRRFGAKIDSPDTFPEATAFAKHG

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
93	25	50	25		0.995533
94			25	75	0.996473
95		50	50		1.0
98			25	75	0.996475

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain