SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene62631

Length: 446 nt

UniGene Fasta

>sp_v2.0_unigene62631
CGTCGTGACCTTGTGTGTCGCTGGCTCTTGCTTTTGGACTTATCAGCACTTGTCCTGGTTCACCCATACGAATTATGAAGAATATTCGTGTGTGTGGTGATTGCCATTCTGCTATCAAGTTCATATCCAAAATTGTGGACCGAGAAATTATATTAAGGGATACAAACCGGTTTCATCATTTCCTGAATGGATTGTGTTCATGTGGGGATTACTGGTGATACCAACTAAGTCAATCAACAAACATATCATTGACATTTTTGGGCGTGCTGACCTTTATTGGGTTGTGTTCCATGTGGAGATTACTGGTGATACCAACTAAATCAACCAACACACATATCATTGACATTAGTGGGCATGTTTGACCATCATTGTCGGGTTCTGCTCATGTGGAAGATTACTTGTGTACACAAACTAAATGAATCAATGAACATATCGTCGACATTATT

Ace file of the UniGene sp_v2.0_unigene62631

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Pentatricopeptide repeat protein 78 (Fragment) n=1 Tax=Funaria hygrometrica RepID=F5CAE0_FUNHY	-	-	1.0e-24	75%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	80%
Blast2go	pentatricopeptide repeat-containing protein mitochondrial-like	-	-	5.20578e-32	87%

Source	InterPros	Term	Type	Identity
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Beta-lactamase, class-A/D	IPR000871	-	-
Sma3	Legume lectin domain	IPR001220	-	-
Sma3	Ribosomal protein S3, C-terminal	IPR001351	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	Immunoglobulin/major histocompatibility complex, conserved site	IPR003006	-	-
Sma3	MAP kinase, conserved site	IPR003527	-	-
Sma3	Domain of unknown function DUF221	IPR003864	-	-
Sma3	K Homology domain, type 2	IPR004044	-	-
Sma3	K Homology domain	IPR004087	-	-
Sma3	Haloacid dehalogenase-like hydrolase	IPR005834	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	2,3-diketo-5-methylthio-1-phosphopentane phosphatase	IPR010041	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	Methyltransferase type 11	IPR013216	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3		IPR018115	-	-
Sma3	Asp/Glu racemase, active site	IPR018187	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: D5AAE0

Fln msg: Unexpected stop codon in the beginning of your sequence, your sequence is shorter than subject: 72 - 246

Fln protein: S*PCVSLALAFGLISTCPGSPIRIMKNIRVCGDCHSAIKFISKIVDREIILRDTNRFHHFLNGLCSCGDYW*

Protein Length: 73

Fln nts: CGTCGTGACCTTGTGTGTCGCTGGCTCTTGCTTTTGGACTTATCAGCACTTGTCCTGGTTCACCCATACGAATTATGAAGAATATTCGTGTGTGTGGTGATTGCCATTCTGCTATCAAGTTCATATCCAAAATTGTGGACCGAGAAATTATATTAAGGGATACAAACCGGTTTCATCATTTCCTGAATGGATTGTGTTCATGTGGGGATTACTGGTGA___TACCAACTAAGTCAATCAACAAACATATCATTGACATTTTTGGGCGTGCTGACCTTTATTGGGTTGTGTTCCATGTGGAGATTACTGGTGATACCAACTAAATCAACCAACACACATATCATTGACATTAGTGGGCATGTTTGACCATCATTGTCGGGTTCTGCTCATGTGGAAGATTACTTGTGTACACAAACTAAATGAATCAATGAACATATCGTCGACATTATT

Fln Alignment:

AllPineV4_c75904___LALAFGLISTCPGSPIRIMKNIRVCGDCHSAIKFISKIVDREIILRDTNRFHHFLNGLCSCGDYW
D5AAE0_______________LAIAFGLISTLPGLPVRIIKNLRVCGDCHTATKFISKIVEREIIIRDANRFHHFKDGLCSCGDYW

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
234	75	25			0.996477

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain