SustainPineDB

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Assembly info
Unigenes
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SSRs
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ECs
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Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene62622

Length: 305 nt

Origin of reads: Uagpf v2

UniGene Fasta

>sp_v2.0_unigene62622
CGTCGTGACCTTGGCTGTCACTCAGTCATTGTTGGCCTAGATGGAAGCTTCTATAGATGTGCGTTTGATCCTGTAAACGGTGGTGAAATGGTGCAAAAGGAGTATGCTAGATTTCTGAAATCAGATGAATCTAGTGACAACTGATGTTTGTTTATTTAATCCTGTCATTGTTGGATTTTAGTTGTAATGAAAGTCTCTTCTTGAACTGAATATAATGTAATGTAAATACTGTATTGTTCCGGTAGTATTGTACAGTATCATTGTAACAGAAATGTTCTCAATAAAAGATTCTAATTTCTTTAGGT

Ace file of the UniGene sp_v2.0_unigene62622

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	WD-repeat protein, putative n=1 Tax=Ricinus communis RepID=B9S4H8_RICCO	-	-	8.0e-09	69%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	94%
Blast2go	uncharacterized protein loc100501634	-	-	3.94633e-16	90%

Source	InterPros	Term	Type	Identity
Sma3	Regulator of chromosome condensation, RCC1	IPR000408	-	-
Sma3	Histidine phosphatase superfamily, clade-2	IPR000560	-	-
Sma3	WD40 repeat	IPR001680	-	-
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	Zinc finger, RING-type, conserved site	IPR017907	-	-
Sma3	Zinc finger, C3HC4 RING-type	IPR018957	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LRE8

Fln msg: your sequence is shorter than subject: 48 - 403

Fln protein: RRDLGCHSVIVGLDGSFYRCAFDPVNGGEMVQKEYARFLKSDESSDN*

Protein Length: 49

Fln nts: CGTCGTGACCTTGGCTGTCACTCAGTCATTGTTGGCCTAGATGGAAGCTTCTATAGATGTGCGTTTGATCCTGTAAACGGTGGTGAAATGGTGCAAAAGGAGTATGCTAGATTTCTGAAATCAGATGAATCTAGTGACAACTGA___TGTTTGTTTATTTAATCCTGTCATTGTTGGATTTTAGTTGTAATGAAAGTCTCTTCTTGAACTGAATATAATGTAATGTAAATACTGTATTGTTCCGGTAGTATTGTACAGTATCATTGTAACAGAAATGTTCTCAATAAAAGATTCTAATTTCTTTAGGT

Fln Alignment:

AllPineV4_rep_c75841___VIVGLDGSFYRCAFDPVNGGEMVQKEYARFLKSDESSDN
B8LRE8_______________VIVGLDGSFYRCAFDPVNGGEMEQKEYARFLKSDESSDS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain