SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene62620

Length: 296 nt

Origin of reads: Uagpf v2

UniGene Fasta

>sp_v2.0_unigene62620
CGTCGTGACCTTGGCTGTCACTCACGTCGTGACCTTGGCTGTCACTCGGCTTTTAATTTCATTTGCACTGACCGAGATGAGCAAACAATGAGCAAGATAGAAAGATATTTTCAGCGACAGGTACCTGAGGTACCTTGGAATAGTGAAGATGCTTTTGAAGCTGTCTTGAAAGATGCAGGGCTTGCATAAGTAGCACACCTTCTTTGAGTCTTCAGATTAAACTTTGTTCATACTGTAATTCAGCTTGTCTGCAAACAAACTTTGGCAATTTAAAAAAAAATGATTTGCAATTGCGT

Ace file of the UniGene sp_v2.0_unigene62620

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	86%
Blast2go	dead-box atp-dependent rna helicase 38-like	-	-	2.55614e-17	77%

Source	InterPros	Term	Type	Identity
Sma3	Helicase, C-terminal	IPR001650	-	-
Sma3	DNA/RNA helicase, DEAD/DEAH box type, N-terminal	IPR011545	-	-
Sma3	Helicase, superfamily 1/2, ATP-binding domain	IPR014001	-	-
Sma3	RNA helicase, DEAD-box type, Q motif	IPR014014	-	-
Sma3		IPR014021	-	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LNL9

Fln msg: your sequence is shorter than subject: 63 - 507

Fln protein: RRDLGCHSRRDLGCHSAFNFICTDRDEQTMSKIERYFQRQVPEVPWNSEDAFEAVLKDAGLA*

Protein Length: 64

Fln nts: CGTCGTGACCTTGGCTGTCACTCACGTCGTGACCTTGGCTGTCACTCGGCTTTTAATTTCATTTGCACTGACCGAGATGAGCAAACAATGAGCAAGATAGAAAGATATTTTCAGCGACAGGTACCTGAGGTACCTTGGAATAGTGAAGATGCTTTTGAAGCTGTCTTGAAAGATGCAGGGCTTGCATAA___GTAGCACACCTTCTTTGAGTCTTCAGATTAAACTTTGTTCATACTGTAATTCAGCTTGTCTGCAAACAAACTTTGGCAATTTAAAAAAAAATGATTTGCAATTGCGT

Fln Alignment:

AllPineV4_rep_c75835___SAFNFICTDRDEQTMSKIERYFQRQVPEVPWNSEDAFEAVLKD
B8LNL9_______________AAFNFICNDRDERIMSKIERYFERQVPEVPWDSEDAFEAVLKD

SNPs (tot: 21)

Position	A %	C %	G %	T %	Probability
28		62		37	1.0
29			62	37	1.0
34		62	37		1.0
36		42		57	1.0
37		11	88		0.923646
38		37	62		1.0
39	37	50		12	1.0
40	37	12		50	1.0
42			37	62	1.0
43		50	50		1.0
46		33	33	33	1.0
47		62		37	1.0
49	25	25	50		1.0
50	25		75		1.0
51		88		11	0.923584
54			12	87	0.992554
56	87	12			0.992554
57	87		12		0.992554
58		12		87	0.992554
60		12		87	0.992554
61	12	87			0.992554

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain