SustainPineDB

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene62595

Length: 980 nt

Origin of reads: Biogeco2 v2 Uagpf v2 Uma v2

UniGene Fasta

Ace file of the UniGene sp_v2.0_unigene62595

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	DC1 domain-containing protein [Arabidopsis thaliana] gb\|AEE30051.1\| DC1 domain-containing protein [Arabidopsis thaliana]	-	-	42%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	30%
Blast2go	dc1 domain-containing protein	-	-	54%

Source	InterPros	Term	Type	Identity
Sma3	Zinc finger, PHD-type	IPR001965	-	-
Sma3	DC1	IPR004146	-	-
Sma3	C1-like	IPR011424	-	-

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: A9NW33

Fln msg: Unexpected STOP codon in 5 prime region,

Fln protein: MAQQSTSFKKGEQIRHFTHPQHALTLVPLTHPFTCHGCKEQGTGARYRCNECNVSIHEFCANAPPSISHPYHTQHPLIFYNKLGTGFVKSKCDVCGHSFKGFAYRCNICNFNIHPCCAELPRELSFYGHPQHALKLFSGPPFAKGSSYTCGGCRRKGSSWVYYCAKCGYFLDKACA*MAINGVQTQGIAVRARQSKFRTAARLATQAGQFFVGSLVESLGEAVAGVILDNATRDFNPHAGHNSHSDH*

Protein Length: 249

Fln nts: ATGGGGAAGGTCTCTGGATAGTTGCGTAGATCAGAATTACATTGATCAGAGATCAATCAATTGATTTGCAAGAGCCTTCTGCTACTGATAGAAGTATATTCTCGAC_-_ATGGCACAGCAGTCGACTAGCTTTAAGAAAGGTGAGCAAATCCGCCATTTCACTCATCCACAGCACGCCCTAACCCTAGTACCCCTGACACATCCATTCACCTGCCATGGATGCAAGGAACAGGGAACTGGGGCTAGATACAGATGCAATGAATGCAACGTCAGCATCCATGAATTCTGTGCCAACGCTCCTCCTTCCATCTCCCATCCATACCACACCCAACATCCCCTCATCTTCTACAACAAGTTAGGAACAGGATTCGTGAAGTCTAAGTGCGATGTCTGCGGCCATTCCTTCAAGGGATTCGCCTACCGCTGCAATATATGTAACTTCAACATTCATCCCTGCTGTGCTGAGCTTCCAAGAGAACTCAGTTTCTATGGCCATCCCCAGCACGCCCTGAAGCTTTTCTCTGGGCCTCCCTTCGCTAAGGGTTCGTCCTACACATGCGGAGGGTGTCGCAGAAAGGGCTCGTCTTGGGTCTACTACTGTGCTAAATGCGGTTATTTTCTCGACAAAGCCTGCGCCTAAATGGCCATCAACGGCGTCCAAACTCAGGGCATCGCTGTTCGCGCAAGACAGAGCAAGTTCAGAACGGCGGCGCGCCTTGCCACGCAAGCCGGTCAATTCTTTGTGGGCAGTCTCGTTGAAAGCCTCGGAGAAGCGGTCGCAGGTGTTATACTTGACAACGCTACCAGAGACTTCAATCCTCATGCTGGTCACAATAGCCATAGTGATCATTAAACGCCAACCATAGATTTGAATGCTAATTATGCCCACATATAGGATCTATTTATAGATTTTACTCCCATGTCGGAGATTTGTATTGTTTTCGTTCCTTCTGACTGCTTGTAATTAGGTTATAGGTATTCGT

Fln Alignment:

AllPineV4_rep_c75751___THPQHALTLVPLTHPFTCHGCKEQGTGARYRCN------EC-NVSIHEFCANAPPSISHPYHTQHPLIFYNKLGTGFVKSKCDVCGHSFKGFAYRCNICN----FNIHPCCAELPRELSFYGHPQHALKLFSGPPFAKGSSYTCGGCRRK--GSSWVYYCAK--CGYFLDKACA*MAINGVQTQGIAVRARQSKFRTAARLATQAGQFFVGSLVESLGEAVAGVIL
A9NW33_______________TRHEHELLLFEGLPAYTCSGCKEKGANIGYKCNINSDSSSCENFTLHELCATLPDAYQHPFHSDVIFKFRPKTS---LSHRCNACWDVVRGYVFETERHHLRHELRLHPLCMALPKILDYSGHANHKLKLVRGD--LKGKEYACSACDTQIDYGGWRYRCEEMACKVYVDLSCAKIDIFGLSDHGIQRVAPVSRRRPVAN--------FVKSF---MSEAVVALLL

SNPs (tot: 52)

Position	A %	C %	G %	T %	Probability
385		40		60	1.0
391		60		40	1.0
393	40		60		1.0
396	60			40	1.0
398			40	60	1.0
399		60	40		1.0
404	25	75			0.996473
406	60	40			1.0
407			60	40	1.0
408		40	60		1.0
409	40		60		1.0
415		80	20		0.995493
420		60		40	1.0
429	80		20		0.995493
451	20	80			0.995493
453	20	80			0.995493
457		80	20		0.995493
458			20	80	0.995493
543	50		50		1.0
547		83		16	0.994512
570		54	45		1.0
579			63	36	1.0
593		81		18	0.999994
604		90	10		0.90298
605		40		60	1.0
608	90		10		0.90298
611		88	11		0.923564
635		55		44	1.0
639		44		44	1.0
640	88	11			0.923564
643		50		50	1.0
657		12	87		0.992554
658		11		88	0.923564
659		88		11	0.923564
670			88	11	0.923572
678	11		88		0.923564
684			87	12	0.992554
690	12	87			0.992554
699		11		88	0.923564
713	12		87		0.992554
730		85		14	0.993533
737	62		37		1.0
745		14		85	0.993533
746	16		83		0.994512
747	16		83		0.994512
750	57	42			1.0
768	25		75		0.996473
791	66			33	0.997452
798	66		33		0.997452
801		25	75		0.996473
812		75	25		0.996479
813	25			75	0.996474

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain