SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene62559

Length: 778 nt

Origin of reads: Biogeco1 v2 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene62559 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Glucan synthase like 3 n=2 Tax=Selaginella moellendorffii RepID=D8QQF0_SELML	-	-	4.0e-37	60%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	71%
Blast2go	glucan synthase like 3	-	-	1.54181e-39	78%

Source	GOs	Term	Type	e value	Identity
Blast2go	plasma membrane	GO:0005886	Cellular Component	1.54181e-39	78%

Source	InterPros	Term	Type	e value	Identity
Sma3	Glycosyl transferase, family 48	IPR003440	-	0.0	-

Full-Lengther Next Prediction

SNPs (tot: 34)

Position	A %	C %	G %	T %	Probability
307		85		14	0.993533
309	85		14		0.993533
310	14	71		14	0.984337
312		85		14	0.993533
313	85		14		0.993533
318	14			85	0.993533
319	85		14		0.993533
325			14	85	0.993533
328	85	14			0.993533
332			14	85	0.993533
335	85		14		0.993533
341	16		83		0.994512
342		83		16	0.994512
346		83	16		0.994512
351		16		83	0.994512
352	16			83	0.994512
353	83		16		0.994512
355		16		83	0.994512
356	16	83			0.994512
357	16			83	0.994512
359		83	16		0.994512
361		16		83	0.994512
364	83	16			0.994512
367	83	16			0.994512
472	50		50		1.0
473	50			50	1.0
474		50	50		1.0
475	50	50			1.0
476	50	50			1.0
483			50	50	1.0
484	50		50		1.0
486	50	50			1.0
487	50		50		1.0
489	50		50		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain