SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v2.0

UniGene Name: sp_v2.0_unigene62546

Length: 805 nt

Origin of reads: Biogeco1 v2 Biogeco2 v2 Uagpf v2 Uma v2

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v2.0_unigene62546 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	putative clathrin assembly protein [Arabidopsis thaliana] sp\|Q9LVD8.1\|CAP7_ARATH RecName: Full=Putative clathrin assembly protein At5g57200 dbj\|BAA96943.1\| unnamed protein product [Arabidopsis thaliana] gb\|AED96865.1\| putative clathrin assembly protein [A	-	-	44%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	92%
Blast2go	clathrin assembly	-	-	68%

Source	InterPros	Term	Type	Identity
Sma3	Carbamoyl-phosphate synthetase, large subunit, ATP-binding	IPR005479	-	-
Sma3	ENTH/VHS	IPR008942	-	-
Sma3	ANTH	IPR011417	-	-
Sma3	Epsin-like, N-terminal	IPR013809	-	-
Sma3	Clathrin adaptor, phosphoinositide-binding, GAT-like	IPR014712	-	-

Full-Lengther Next Prediction

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
339	83	16			0.994512
341	16		83		0.994512
615	10			90	0.90298
623	88	11			0.991528
624		11		88	0.991528
714	25		75		0.996473
731	33		66		0.997461
732			33	66	0.997461
733	66		33		0.997461
740		33		66	0.997461

SSRs (tot: 1)

Start position	End position	Sequence	Length
343	355	GGT GGT GGT GGT G	13

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain